miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 52944 0.68 0.437755
Target:  5'- cCGCGcCCGCgGCgCAuuGC-GCCGCGGGGu -3'
miRNA:   3'- -GCGC-GGCGgCG-GU--CGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 96075 0.68 0.45408
Target:  5'- uCGCGCgGCCuguauccguugcgGCUAcuGUUGCCGCGGuuuAGg -3'
miRNA:   3'- -GCGCGgCGG-------------CGGU--CGACGGCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 6832 0.68 0.429299
Target:  5'- aGCGUCGCCgggcguaccuuGCUGGUUGCCG-GGAAc -3'
miRNA:   3'- gCGCGGCGG-----------CGGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 66210 0.68 0.458431
Target:  5'- uGCGCCuccGCgGCCAGCgaaggacuuggcgaGCUGCGGGc- -3'
miRNA:   3'- gCGCGG---CGgCGGUCGa-------------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 37866 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 30843 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 73472 0.68 0.41268
Target:  5'- gGCGCuUGCCGUCAGgaagGCC-CGGGAGa -3'
miRNA:   3'- gCGCG-GCGGCGGUCga--CGGcGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 25604 0.68 0.41268
Target:  5'- aGCGCCGg-GCCGGC-GuuGCGGAAc -3'
miRNA:   3'- gCGCGGCggCGGUCGaCggCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 149869 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 155960 0.68 0.428458
Target:  5'- uGCGCgGCucgcggaCGCUcuGGCUGCCGuCGGGAu -3'
miRNA:   3'- gCGCGgCG-------GCGG--UCGACGGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 1144 0.68 0.425943
Target:  5'- gGCGCacgggacgauccgGCCGCCAGuCUGCCGgcgcgcgaUGGggGu -3'
miRNA:   3'- gCGCGg------------CGGCGGUC-GACGGC--------GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 156892 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 96613 0.68 0.429299
Target:  5'- gGC-CCGCagcuCGCCAaguccuucGCUgGCCGCGGAGGc -3'
miRNA:   3'- gCGcGGCG----GCGGU--------CGA-CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 154528 0.68 0.429299
Target:  5'- gCGCGCaaacaaGCgUGCCGGCgaugGCaCGCGGAu- -3'
miRNA:   3'- -GCGCGg-----CG-GCGGUCGa---CG-GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 40660 0.68 0.437755
Target:  5'- aGgGUCGCCGUuuCGGUUGCCGCcaGGAc- -3'
miRNA:   3'- gCgCGGCGGCG--GUCGACGGCG--CCUuc -5'
24349 3' -64.4 NC_005264.1 + 24245 0.68 0.429299
Target:  5'- uGCaCC-CCaCC-GCUGCCGCGGAAGu -3'
miRNA:   3'- gCGcGGcGGcGGuCGACGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 154072 0.67 0.469846
Target:  5'- cCGCGCCGCCGUagaGGCUcauauggaagaggcGCUuaGGAAc -3'
miRNA:   3'- -GCGCGGCGGCGg--UCGA--------------CGGcgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 10538 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 39832 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 43830 0.67 0.472501
Target:  5'- gCGCGCaaccuGCgGUUauaaagaagggGGCUGCCGCGGGGa -3'
miRNA:   3'- -GCGCGg----CGgCGG-----------UCGACGGCGCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.