miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 39476 0.7 0.342323
Target:  5'- gCGCGCUcaGCCGCCAggggcaggccugcGCUGUgGUGGAc- -3'
miRNA:   3'- -GCGCGG--CGGCGGU-------------CGACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 161398 0.7 0.343047
Target:  5'- --gGCCGgUGCUGGCUcCCGCGGAGGc -3'
miRNA:   3'- gcgCGGCgGCGGUCGAcGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 36766 0.7 0.343047
Target:  5'- gGCGCCGUCGCCGcUUGCgCGCaGAAu -3'
miRNA:   3'- gCGCGGCGGCGGUcGACG-GCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 42371 0.7 0.343047
Target:  5'- --gGCCGgUGCUGGCUcCCGCGGAGGc -3'
miRNA:   3'- gcgCGGCgGCGGUCGAcGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 155792 0.7 0.343047
Target:  5'- gGCGCCGUCGCCGcUUGCgCGCaGAAu -3'
miRNA:   3'- gCGCGGCGGCGGUcGACG-GCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 59113 0.7 0.350352
Target:  5'- gGCgGCCGCCGCC-GCugaUGCCGCGc--- -3'
miRNA:   3'- gCG-CGGCGGCGGuCG---ACGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 85037 0.7 0.350352
Target:  5'- cCGCGCCgucaauGCCGUCuGC-GCCGCGGu-- -3'
miRNA:   3'- -GCGCGG------CGGCGGuCGaCGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 31248 0.7 0.353305
Target:  5'- gCGCGCCGCuCccuccacaccuaggcGCCAGgUGCCGCGcacaugcaGAAGc -3'
miRNA:   3'- -GCGCGGCG-G---------------CGGUCgACGGCGC--------CUUC- -5'
24349 3' -64.4 NC_005264.1 + 96349 0.69 0.357767
Target:  5'- gCGCGCCGCgcagccCGCCaAGCauugagucugGCCGCGGcGGu -3'
miRNA:   3'- -GCGCGGCG------GCGG-UCGa---------CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 143743 0.69 0.357767
Target:  5'- cCGCGCCGCCGCggugCAGUccuggcucccuaUGC-GCGGGAa -3'
miRNA:   3'- -GCGCGGCGGCG----GUCG------------ACGgCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 95329 0.69 0.357767
Target:  5'- -uUGCCGCCGCCgGGC-GCCGCGa--- -3'
miRNA:   3'- gcGCGGCGGCGG-UCGaCGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 61925 0.69 0.365291
Target:  5'- gGCGCCGCCGCUuGCgcgaagaggaacUGCuagagaCGCGGAGa -3'
miRNA:   3'- gCGCGGCGGCGGuCG------------ACG------GCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 18163 0.69 0.365291
Target:  5'- uCGuCGUCGgCGCCA-CUGUCGUGGggGc -3'
miRNA:   3'- -GC-GCGGCgGCGGUcGACGGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 92697 0.69 0.372924
Target:  5'- gGCGCCGCCGCggCAGCaaGCaCGuuGAGGg -3'
miRNA:   3'- gCGCGGCGGCG--GUCGa-CG-GCgcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 34262 0.69 0.379886
Target:  5'- gCGCGCgGuaauCCGCguGCUgcgcuccGCCGCGGAAa -3'
miRNA:   3'- -GCGCGgC----GGCGguCGA-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 104083 0.69 0.387722
Target:  5'- cCGCGCgugCGCCucugauaGCgCAGCggcgGCCGCGGAu- -3'
miRNA:   3'- -GCGCG---GCGG-------CG-GUCGa---CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 65312 0.69 0.388512
Target:  5'- uGC-CCGCUGCCAcGCcacaGCCGCGGcAGc -3'
miRNA:   3'- gCGcGGCGGCGGU-CGa---CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 157023 0.69 0.395664
Target:  5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3'
miRNA:   3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 37996 0.69 0.395664
Target:  5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3'
miRNA:   3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 113486 0.69 0.396464
Target:  5'- aCGCGCCgaucuuGCCgcguuccuccggGCCgAGCgcgaacaGCCGCGGGAGg -3'
miRNA:   3'- -GCGCGG------CGG------------CGG-UCGa------CGGCGCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.