miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 155333 0.69 0.396464
Target:  5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3'
miRNA:   3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 36306 0.69 0.396464
Target:  5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3'
miRNA:   3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 46407 0.68 0.402093
Target:  5'- uCGCccCCGCgGCCAGacgcccccagcgacCUGCCGCGGGc- -3'
miRNA:   3'- -GCGc-GGCGgCGGUC--------------GACGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 68255 0.68 0.404521
Target:  5'- cCGCGCCGCgggcgGCCugcuGCUGCCGCc---- -3'
miRNA:   3'- -GCGCGGCGg----CGGu---CGACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 152917 0.68 0.411859
Target:  5'- gCGCGCCGCaaaGCCcGCaGUCGCGaguccccGAAGg -3'
miRNA:   3'- -GCGCGGCGg--CGGuCGaCGGCGC-------CUUC- -5'
24349 3' -64.4 NC_005264.1 + 25604 0.68 0.41268
Target:  5'- aGCGCCGg-GCCGGC-GuuGCGGAAc -3'
miRNA:   3'- gCGCGGCggCGGUCGaCggCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 73472 0.68 0.41268
Target:  5'- gGCGCuUGCCGUCAGgaagGCC-CGGGAGa -3'
miRNA:   3'- gCGCG-GCGGCGGUCga--CGGcGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 59710 0.68 0.42094
Target:  5'- gCGCGCCG-CGCCGGCggcuaCCGCGccGGa -3'
miRNA:   3'- -GCGCGGCgGCGGUCGac---GGCGCcuUC- -5'
24349 3' -64.4 NC_005264.1 + 27871 0.68 0.42094
Target:  5'- uGCGCCGCCGCCuuuUUGUCGUGu--- -3'
miRNA:   3'- gCGCGGCGGCGGuc-GACGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 1144 0.68 0.425943
Target:  5'- gGCGCacgggacgauccgGCCGCCAGuCUGCCGgcgcgcgaUGGggGu -3'
miRNA:   3'- gCGCGg------------CGGCGGUC-GACGGC--------GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 120171 0.68 0.425943
Target:  5'- gGCGCacgggacgauccgGCCGCCAGuCUGCCGgcgcgcgaUGGggGu -3'
miRNA:   3'- gCGCGg------------CGGCGGUC-GACGGC--------GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 155960 0.68 0.428458
Target:  5'- uGCGCgGCucgcggaCGCUcuGGCUGCCGuCGGGAu -3'
miRNA:   3'- gCGCGgCG-------GCGG--UCGACGGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 136360 0.68 0.429299
Target:  5'- gGCGCugggCGCUGCCGGCgcgaauagcGCUGUGGAGc -3'
miRNA:   3'- gCGCG----GCGGCGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 132452 0.68 0.429299
Target:  5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3'
miRNA:   3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5'
24349 3' -64.4 NC_005264.1 + 6832 0.68 0.429299
Target:  5'- aGCGUCGCCgggcguaccuuGCUGGUUGCCG-GGAAc -3'
miRNA:   3'- gCGCGGCGG-----------CGGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 96613 0.68 0.429299
Target:  5'- gGC-CCGCagcuCGCCAaguccuucGCUgGCCGCGGAGGc -3'
miRNA:   3'- gCGcGGCG----GCGGU--------CGA-CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 24245 0.68 0.429299
Target:  5'- uGCaCC-CCaCC-GCUGCCGCGGAAGu -3'
miRNA:   3'- gCGcGGcGGcGGuCGACGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 154528 0.68 0.429299
Target:  5'- gCGCGCaaacaaGCgUGCCGGCgaugGCaCGCGGAu- -3'
miRNA:   3'- -GCGCGg-----CG-GCGGUCGa---CG-GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 13425 0.68 0.429299
Target:  5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3'
miRNA:   3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5'
24349 3' -64.4 NC_005264.1 + 13205 0.68 0.436905
Target:  5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3'
miRNA:   3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.