miRNA display CGI


Results 121 - 140 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 132232 0.68 0.436905
Target:  5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3'
miRNA:   3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 40660 0.68 0.437755
Target:  5'- aGgGUCGCCGUuuCGGUUGCCGCcaGGAc- -3'
miRNA:   3'- gCgCGGCGGCG--GUCGACGGCG--CCUuc -5'
24349 3' -64.4 NC_005264.1 + 159686 0.68 0.437755
Target:  5'- aGgGUCGCCGUuuCGGUUGCCGCcaGGAc- -3'
miRNA:   3'- gCgCGGCGGCG--GUCGACGGCG--CCUuc -5'
24349 3' -64.4 NC_005264.1 + 52944 0.68 0.437755
Target:  5'- cCGCGcCCGCgGCgCAuuGC-GCCGCGGGGu -3'
miRNA:   3'- -GCGC-GGCGgCG-GU--CGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 37866 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 77739 0.68 0.437755
Target:  5'- uGCGCCGagggacUCGCCGGCcaccacaaacggUGCgGCGGAc- -3'
miRNA:   3'- gCGCGGC------GGCGGUCG------------ACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 28045 0.68 0.437755
Target:  5'- gCGCGCgCGaCGCCGGgUaaaaGCgCGCGGAAGc -3'
miRNA:   3'- -GCGCG-GCgGCGGUCgA----CG-GCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 149869 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 42265 0.68 0.437755
Target:  5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3'
miRNA:   3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 30843 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 161292 0.68 0.437755
Target:  5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3'
miRNA:   3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 156892 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 79394 0.68 0.446305
Target:  5'- aGaaCCGCCGCgGGCguggcgagGCCGCGGcGGa -3'
miRNA:   3'- gCgcGGCGGCGgUCGa-------CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 90964 0.68 0.446305
Target:  5'- uGCGUCGggcgcCCGCguGCcGUCGCGGAAc -3'
miRNA:   3'- gCGCGGC-----GGCGguCGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 96075 0.68 0.45408
Target:  5'- uCGCGCgGCCuguauccguugcgGCUAcuGUUGCCGCGGuuuAGg -3'
miRNA:   3'- -GCGCGgCGG-------------CGGU--CGACGGCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 66210 0.68 0.458431
Target:  5'- uGCGCCuccGCgGCCAGCgaaggacuuggcgaGCUGCGGGc- -3'
miRNA:   3'- gCGCGG---CGgCGGUCGa-------------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 1205 0.67 0.463681
Target:  5'- gGCGuCCGCgGCCAug-GCUGCGGGGu -3'
miRNA:   3'- gCGC-GGCGgCGGUcgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 120232 0.67 0.463681
Target:  5'- gGCGuCCGCgGCCAug-GCUGCGGGGu -3'
miRNA:   3'- gCGC-GGCGgCGGUcgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 116419 0.67 0.463681
Target:  5'- cCGCGgCagGUCGCUgggGGCgucugGCCGCGGggGc -3'
miRNA:   3'- -GCGCgG--CGGCGG---UCGa----CGGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 154072 0.67 0.469846
Target:  5'- cCGCGCCGCCGUagaGGCUcauauggaagaggcGCUuaGGAAc -3'
miRNA:   3'- -GCGCGGCGGCGg--UCGA--------------CGGcgCCUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.