miRNA display CGI


Results 141 - 160 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 43830 0.67 0.472501
Target:  5'- gCGCGCaaccuGCgGUUauaaagaagggGGCUGCCGCGGGGa -3'
miRNA:   3'- -GCGCGg----CGgCGG-----------UCGACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 87997 0.67 0.472501
Target:  5'- aGUGCCGCCGCUAcGagaUGUCGCGuauGGg -3'
miRNA:   3'- gCGCGGCGGCGGU-Cg--ACGGCGCcu-UC- -5'
24349 3' -64.4 NC_005264.1 + 94512 0.67 0.472501
Target:  5'- aGUGCaGCCGUCGGCca-CGUGGGAGg -3'
miRNA:   3'- gCGCGgCGGCGGUCGacgGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 17683 0.67 0.472501
Target:  5'- -aCGCCgGCuCGUCAGCcGCUGgCGGAGGa -3'
miRNA:   3'- gcGCGG-CG-GCGGUCGaCGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 39832 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 158858 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 94540 0.67 0.481404
Target:  5'- aGCGgCGCCGCacugAGaaaUGCCGCuGggGa -3'
miRNA:   3'- gCGCgGCGGCGg---UCg--ACGGCGcCuuC- -5'
24349 3' -64.4 NC_005264.1 + 158758 0.67 0.481404
Target:  5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3'
miRNA:   3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 126077 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 92989 0.67 0.481404
Target:  5'- aCGCGCCGCaGCacgCGGCcGuaGCGGggGc -3'
miRNA:   3'- -GCGCGGCGgCG---GUCGaCggCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 26650 0.67 0.481404
Target:  5'- aGCGCgG-CGCCGGC-GCCGCGcuAGa -3'
miRNA:   3'- gCGCGgCgGCGGUCGaCGGCGCcuUC- -5'
24349 3' -64.4 NC_005264.1 + 129565 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 13889 0.67 0.481404
Target:  5'- aCGCGUCGUCGCCuGCaGgCGaCGGGGc -3'
miRNA:   3'- -GCGCGGCGGCGGuCGaCgGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 136193 0.67 0.481404
Target:  5'- aGCGCgG-CGCCGGC-GCCGCGcuAAGg -3'
miRNA:   3'- gCGCGgCgGCGGUCGaCGGCGCc-UUC- -5'
24349 3' -64.4 NC_005264.1 + 39732 0.67 0.481404
Target:  5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3'
miRNA:   3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 21239 0.67 0.481404
Target:  5'- cCGCGuuGaCGaCGGCUcgagugugcgcGCCGCGGAGGu -3'
miRNA:   3'- -GCGCggCgGCgGUCGA-----------CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 7050 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 120771 0.67 0.481404
Target:  5'- gCGCaGCUGaCGCCAcGC-GCCGCGGGc- -3'
miRNA:   3'- -GCG-CGGCgGCGGU-CGaCGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 10538 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 124563 0.67 0.484988
Target:  5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3'
miRNA:   3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.