miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 49803 0.72 0.241174
Target:  5'- -uCGCCGCgGcCCAGUcgcgGCCGCGGAAa -3'
miRNA:   3'- gcGCGGCGgC-GGUCGa---CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 52944 0.68 0.437755
Target:  5'- cCGCGcCCGCgGCgCAuuGC-GCCGCGGGGu -3'
miRNA:   3'- -GCGC-GGCGgCG-GU--CGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 54920 0.66 0.517789
Target:  5'- uCGCGgCGCUGCUGGCgaacgGCUGCGa--- -3'
miRNA:   3'- -GCGCgGCGGCGGUCGa----CGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 54943 0.66 0.564708
Target:  5'- aGCGCauacgcaccgCGCCGCUAGCUGCCa------ -3'
miRNA:   3'- gCGCG----------GCGGCGGUCGACGGcgccuuc -5'
24349 3' -64.4 NC_005264.1 + 55643 0.72 0.241174
Target:  5'- gCGCGCCGCCGCCuuuaguuuuGGCgGCCcCGGu-- -3'
miRNA:   3'- -GCGCGGCGGCGG---------UCGaCGGcGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 55905 0.72 0.241174
Target:  5'- uGCgGCCGCCG-CAGCUGUCGaGGAAa -3'
miRNA:   3'- gCG-CGGCGGCgGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 57996 0.66 0.564708
Target:  5'- gGCgGCCGUgGCuCAGCgGCCccgGCGGAc- -3'
miRNA:   3'- gCG-CGGCGgCG-GUCGaCGG---CGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 58309 0.73 0.225138
Target:  5'- gCGCGCU-UCGCCGGCUGCC-CGcGAAGg -3'
miRNA:   3'- -GCGCGGcGGCGGUCGACGGcGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 59113 0.7 0.350352
Target:  5'- gGCgGCCGCCGCC-GCugaUGCCGCGc--- -3'
miRNA:   3'- gCG-CGGCGGCGGuCG---ACGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 59710 0.68 0.42094
Target:  5'- gCGCGCCG-CGCCGGCggcuaCCGCGccGGa -3'
miRNA:   3'- -GCGCGGCgGCGGUCGac---GGCGCcuUC- -5'
24349 3' -64.4 NC_005264.1 + 59966 0.7 0.321796
Target:  5'- cCGCGCCGCUcaGCCAcGCggcggugGCCGCGaGcGAGa -3'
miRNA:   3'- -GCGCGGCGG--CGGU-CGa------CGGCGC-C-UUC- -5'
24349 3' -64.4 NC_005264.1 + 61925 0.69 0.365291
Target:  5'- gGCGCCGCCGCUuGCgcgaagaggaacUGCuagagaCGCGGAGa -3'
miRNA:   3'- gCGCGGCGGCGGuCG------------ACG------GCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 62742 0.66 0.564708
Target:  5'- cCGCGUCGUCGCUgAGCc-CCGCGGc-- -3'
miRNA:   3'- -GCGCGGCGGCGG-UCGacGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 63003 0.66 0.563757
Target:  5'- aGCGCUucuGCCGCCGaaggcacGgaGUCGgGGggGa -3'
miRNA:   3'- gCGCGG---CGGCGGU-------CgaCGGCgCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 64170 0.66 0.564708
Target:  5'- uGUGCaagCGCCGCCAGCacuggGUCGagcaGGAAc -3'
miRNA:   3'- gCGCG---GCGGCGGUCGa----CGGCg---CCUUc -5'
24349 3' -64.4 NC_005264.1 + 64515 0.72 0.241174
Target:  5'- cCGCGCUGUucUGUCcGCgccGCCGCGGAGGg -3'
miRNA:   3'- -GCGCGGCG--GCGGuCGa--CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 65312 0.69 0.388512
Target:  5'- uGC-CCGCUGCCAcGCcacaGCCGCGGcAGc -3'
miRNA:   3'- gCGcGGCGGCGGU-CGa---CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 66210 0.68 0.458431
Target:  5'- uGCGCCuccGCgGCCAGCgaaggacuuggcgaGCUGCGGGc- -3'
miRNA:   3'- gCGCGG---CGgCGGUCGa-------------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 66609 0.74 0.18239
Target:  5'- uGCGCCGCguUGCCGGCgccGUCGCGGcccGAGg -3'
miRNA:   3'- gCGCGGCG--GCGGUCGa--CGGCGCC---UUC- -5'
24349 3' -64.4 NC_005264.1 + 67490 0.73 0.214957
Target:  5'- aCGCGCCGcCCGUCGGCcccauUGCCuCGGAu- -3'
miRNA:   3'- -GCGCGGC-GGCGGUCG-----ACGGcGCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.