miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 87997 0.67 0.472501
Target:  5'- aGUGCCGCCGCUAcGagaUGUCGCGuauGGg -3'
miRNA:   3'- gCGCGGCGGCGGU-Cg--ACGGCGCcu-UC- -5'
24349 3' -64.4 NC_005264.1 + 90964 0.68 0.446305
Target:  5'- uGCGUCGggcgcCCGCguGCcGUCGCGGAAc -3'
miRNA:   3'- gCGCGGC-----GGCGguCGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 91079 0.66 0.552383
Target:  5'- gGCGCCaGCaggucgGCUagucguaacgcgauGGCUGUCGCGGAGu -3'
miRNA:   3'- gCGCGG-CGg-----CGG--------------UCGACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 92165 0.67 0.490388
Target:  5'- gGCGUaaaaauUGCCuGCCGGCggcGCCGCGGc-- -3'
miRNA:   3'- gCGCG------GCGG-CGGUCGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 92691 0.67 0.49854
Target:  5'- aCGCgGCCGCCuCCuggAGCUuauugccGCaCGCGGGAGu -3'
miRNA:   3'- -GCG-CGGCGGcGG---UCGA-------CG-GCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 92697 0.69 0.372924
Target:  5'- gGCGCCGCCGCggCAGCaaGCaCGuuGAGGg -3'
miRNA:   3'- gCGCGGCGGCG--GUCGa-CG-GCgcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 92989 0.67 0.481404
Target:  5'- aCGCGCCGCaGCacgCGGCcGuaGCGGggGc -3'
miRNA:   3'- -GCGCGGCGgCG---GUCGaCggCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 93039 0.67 0.490388
Target:  5'- cCGCGCCGaauGCguGCUGCUGCGc--- -3'
miRNA:   3'- -GCGCGGCgg-CGguCGACGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 94512 0.67 0.472501
Target:  5'- aGUGCaGCCGUCGGCca-CGUGGGAGg -3'
miRNA:   3'- gCGCGgCGGCGGUCGacgGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 94540 0.67 0.481404
Target:  5'- aGCGgCGCCGCacugAGaaaUGCCGCuGggGa -3'
miRNA:   3'- gCGCgGCGGCGg---UCg--ACGGCGcCuuC- -5'
24349 3' -64.4 NC_005264.1 + 95329 0.69 0.357767
Target:  5'- -uUGCCGCCGCCgGGC-GCCGCGa--- -3'
miRNA:   3'- gcGCGGCGGCGG-UCGaCGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 95368 0.67 0.49945
Target:  5'- gGCGCgUGCCGCCAaaCUGCCaggcGUGGGAc -3'
miRNA:   3'- gCGCG-GCGGCGGUc-GACGG----CGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 96075 0.68 0.45408
Target:  5'- uCGCGCgGCCuguauccguugcgGCUAcuGUUGCCGCGGuuuAGg -3'
miRNA:   3'- -GCGCGgCGG-------------CGGU--CGACGGCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 96349 0.69 0.357767
Target:  5'- gCGCGCCGCgcagccCGCCaAGCauugagucugGCCGCGGcGGu -3'
miRNA:   3'- -GCGCGGCG------GCGG-UCGa---------CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 96613 0.68 0.429299
Target:  5'- gGC-CCGCagcuCGCCAaguccuucGCUgGCCGCGGAGGc -3'
miRNA:   3'- gCGcGGCG----GCGGU--------CGA-CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 97441 0.77 0.11708
Target:  5'- gGCGCCGCCGCggaucugauagacgUAGC-GCCGCuGGAAGa -3'
miRNA:   3'- gCGCGGCGGCG--------------GUCGaCGGCG-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 100584 0.67 0.508584
Target:  5'- aGCGCCGUCGUuguaCAGcCUGUgGCGGc-- -3'
miRNA:   3'- gCGCGGCGGCG----GUC-GACGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 102128 0.66 0.563757
Target:  5'- aCGagGCCGCgGCCAacaaccuGCUGaccuCUGCGGAGGc -3'
miRNA:   3'- -GCg-CGGCGgCGGU-------CGAC----GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 102215 0.74 0.18239
Target:  5'- aGCuGCUGCUccugcgcgaGCCGGCUGCCGCGGc-- -3'
miRNA:   3'- gCG-CGGCGG---------CGGUCGACGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 102865 0.66 0.517789
Target:  5'- uCGCGgccaCCGCCGCgUGGCUGagcggCGCGGAc- -3'
miRNA:   3'- -GCGC----GGCGGCG-GUCGACg----GCGCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.