miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 123616 0.7 0.308184
Target:  5'- aCGCagGCCcuccCCGCCAGC-GCCGCGGcGGc -3'
miRNA:   3'- -GCG--CGGc---GGCGGUCGaCGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 122624 0.67 0.490388
Target:  5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3'
miRNA:   3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 122508 0.66 0.564708
Target:  5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3'
miRNA:   3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 122056 0.71 0.295016
Target:  5'- gGCuCCGCUcUCGGC-GCCGCGGAAGa -3'
miRNA:   3'- gCGcGGCGGcGGUCGaCGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 121880 0.73 0.200427
Target:  5'- uCGCGCCGUCGCCcGCUGCgGCu---- -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACGgCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 121426 0.72 0.246727
Target:  5'- aGC-CCGgCGCCGGcCUGCCuaGGAAGa -3'
miRNA:   3'- gCGcGGCgGCGGUC-GACGGcgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 121206 0.66 0.529853
Target:  5'- cCGCGCUGCCgcaucugGCCAGCcGCUucuacgagcucgucaGCGGGc- -3'
miRNA:   3'- -GCGCGGCGG-------CGGUCGaCGG---------------CGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 121114 0.72 0.264023
Target:  5'- -aCGCCGCUGCCGcCUGgCGCGaGAAGa -3'
miRNA:   3'- gcGCGGCGGCGGUcGACgGCGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 120771 0.67 0.481404
Target:  5'- gCGCaGCUGaCGCCAcGC-GCCGCGGGc- -3'
miRNA:   3'- -GCG-CGGCgGCGGU-CGaCGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 120704 0.73 0.225138
Target:  5'- uCGCGCCGaCaaaGCCGGCgGUCggGCGGAGGa -3'
miRNA:   3'- -GCGCGGC-Gg--CGGUCGaCGG--CGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 120232 0.67 0.463681
Target:  5'- gGCGuCCGCgGCCAug-GCUGCGGGGu -3'
miRNA:   3'- gCGC-GGCGgCGGUcgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 120171 0.68 0.425943
Target:  5'- gGCGCacgggacgauccgGCCGCCAGuCUGCCGgcgcgcgaUGGggGu -3'
miRNA:   3'- gCGCGg------------CGGCGGUC-GACGGC--------GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 118053 0.66 0.527059
Target:  5'- gGCGaCCGCggCGUCGGCaacgaucGCCGCGGGc- -3'
miRNA:   3'- gCGC-GGCG--GCGGUCGa------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 116419 0.67 0.463681
Target:  5'- cCGCGgCagGUCGCUgggGGCgucugGCCGCGGggGc -3'
miRNA:   3'- -GCGCgG--CGGCGG---UCGa----CGGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 113486 0.69 0.396464
Target:  5'- aCGCGCCgaucuuGCCgcguuccuccggGCCgAGCgcgaacaGCCGCGGGAGg -3'
miRNA:   3'- -GCGCGG------CGG------------CGG-UCGa------CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 112253 0.67 0.490388
Target:  5'- aGCGCCggGCUGCuCAGC-GCCGCGu--- -3'
miRNA:   3'- gCGCGG--CGGCG-GUCGaCGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 107916 0.7 0.308184
Target:  5'- uCGCaGCCGuUCGCCAGCagcGCCGCgaccuucgcguGGAAGg -3'
miRNA:   3'- -GCG-CGGC-GGCGGUCGa--CGGCG-----------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 107660 0.66 0.564708
Target:  5'- uCGCgGUCGCCGCCuuCaGCCGCGcccaGAGGc -3'
miRNA:   3'- -GCG-CGGCGGCGGucGaCGGCGC----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 107020 0.71 0.278558
Target:  5'- cCGCGCCGCCaCCGgcugaauguugaguuGCUcucguaGCCGCGGAGc -3'
miRNA:   3'- -GCGCGGCGGcGGU---------------CGA------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 106523 0.71 0.28229
Target:  5'- gCGCGaCGgCGgCAGCgcgGCCGCGGAGu -3'
miRNA:   3'- -GCGCgGCgGCgGUCGa--CGGCGCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.