miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 59113 0.7 0.350352
Target:  5'- gGCgGCCGCCGCC-GCugaUGCCGCGc--- -3'
miRNA:   3'- gCG-CGGCGGCGGuCG---ACGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 31248 0.7 0.353305
Target:  5'- gCGCGCCGCuCccuccacaccuaggcGCCAGgUGCCGCGcacaugcaGAAGc -3'
miRNA:   3'- -GCGCGGCG-G---------------CGGUCgACGGCGC--------CUUC- -5'
24349 3' -64.4 NC_005264.1 + 96349 0.69 0.357767
Target:  5'- gCGCGCCGCgcagccCGCCaAGCauugagucugGCCGCGGcGGu -3'
miRNA:   3'- -GCGCGGCG------GCGG-UCGa---------CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 34262 0.69 0.379886
Target:  5'- gCGCGCgGuaauCCGCguGCUgcgcuccGCCGCGGAAa -3'
miRNA:   3'- -GCGCGgC----GGCGguCGA-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 65312 0.69 0.388512
Target:  5'- uGC-CCGCUGCCAcGCcacaGCCGCGGcAGc -3'
miRNA:   3'- gCGcGGCGGCGGU-CGa---CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 157023 0.69 0.395664
Target:  5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3'
miRNA:   3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 155333 0.69 0.396464
Target:  5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3'
miRNA:   3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 19536 0.7 0.335853
Target:  5'- aCG-GCCGCCGCCAacGUUGCCGgaGcGAGGu -3'
miRNA:   3'- -GCgCGGCGGCGGU--CGACGGCg-C-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 152927 0.7 0.335139
Target:  5'- aGCGCgagauagCGCCGCCuuuCUGCCGCcagggcugGGAAGg -3'
miRNA:   3'- gCGCG-------GCGGCGGuc-GACGGCG--------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 104962 0.7 0.328769
Target:  5'- cCGCGCCaugGCCGCCGG-UGCCGCc---- -3'
miRNA:   3'- -GCGCGG---CGGCGGUCgACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 34752 0.71 0.28229
Target:  5'- gCGCGCCgGUCGCC-GCUGUCGCuacacGAAGa -3'
miRNA:   3'- -GCGCGG-CGGCGGuCGACGGCGc----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 159767 0.71 0.288598
Target:  5'- uCG-GCCGCCGCCAGUcGCgGCGaGAc- -3'
miRNA:   3'- -GCgCGGCGGCGGUCGaCGgCGC-CUuc -5'
24349 3' -64.4 NC_005264.1 + 155842 0.71 0.295016
Target:  5'- --aGCCGCCGCgGGCcacGCCGaGGAGGa -3'
miRNA:   3'- gcgCGGCGGCGgUCGa--CGGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 18060 0.71 0.295016
Target:  5'- gGCGCCGCgaGCCAGg-GCgCGCGGGc- -3'
miRNA:   3'- gCGCGGCGg-CGGUCgaCG-GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 107916 0.7 0.308184
Target:  5'- uCGCaGCCGuUCGCCAGCagcGCCGCgaccuucgcguGGAAGg -3'
miRNA:   3'- -GCG-CGGC-GGCGGUCGa--CGGCG-----------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 123616 0.7 0.308184
Target:  5'- aCGCagGCCcuccCCGCCAGC-GCCGCGGcGGc -3'
miRNA:   3'- -GCG--CGGc---GGCGGUCGaCGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 23736 0.7 0.314934
Target:  5'- -aCGCCGCCGCuCAGCagcaGCCGCGa--- -3'
miRNA:   3'- gcGCGGCGGCG-GUCGa---CGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 59966 0.7 0.321796
Target:  5'- cCGCGCCGCUcaGCCAcGCggcggugGCCGCGaGcGAGa -3'
miRNA:   3'- -GCGCGGCGG--CGGU-CGa------CGGCGC-C-UUC- -5'
24349 3' -64.4 NC_005264.1 + 40787 0.7 0.328769
Target:  5'- cCGCGgCGCCGagAGCggagccgcuUGCCGCGGGGu -3'
miRNA:   3'- -GCGCgGCGGCggUCG---------ACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 68255 0.68 0.404521
Target:  5'- cCGCGCCGCgggcgGCCugcuGCUGCCGCc---- -3'
miRNA:   3'- -GCGCGGCGg----CGGu---CGACGGCGccuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.