miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 107916 0.7 0.308184
Target:  5'- uCGCaGCCGuUCGCCAGCagcGCCGCgaccuucgcguGGAAGg -3'
miRNA:   3'- -GCG-CGGC-GGCGGUCGa--CGGCG-----------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 123616 0.7 0.308184
Target:  5'- aCGCagGCCcuccCCGCCAGC-GCCGCGGcGGc -3'
miRNA:   3'- -GCG--CGGc---GGCGGUCGaCGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 23736 0.7 0.314934
Target:  5'- -aCGCCGCCGCuCAGCagcaGCCGCGa--- -3'
miRNA:   3'- gcGCGGCGGCG-GUCGa---CGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 59966 0.7 0.321796
Target:  5'- cCGCGCCGCUcaGCCAcGCggcggugGCCGCGaGcGAGa -3'
miRNA:   3'- -GCGCGGCGG--CGGU-CGa------CGGCGC-C-UUC- -5'
24349 3' -64.4 NC_005264.1 + 158503 0.7 0.342323
Target:  5'- gCGCGCUcaGCCGCCAggggcaggccugcGCUGUgGUGGAc- -3'
miRNA:   3'- -GCGCGG--CGGCGGU-------------CGACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 19536 0.7 0.335853
Target:  5'- aCG-GCCGCCGCCAacGUUGCCGgaGcGAGGu -3'
miRNA:   3'- -GCgCGGCGGCGGU--CGACGGCg-C-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 152927 0.7 0.335139
Target:  5'- aGCGCgagauagCGCCGCCuuuCUGCCGCcagggcugGGAAGg -3'
miRNA:   3'- gCGCG-------GCGGCGGuc-GACGGCG--------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 104962 0.7 0.328769
Target:  5'- cCGCGCCaugGCCGCCGG-UGCCGCc---- -3'
miRNA:   3'- -GCGCGG---CGGCGGUCgACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 40787 0.7 0.328769
Target:  5'- cCGCGgCGCCGagAGCggagccgcuUGCCGCGGGGu -3'
miRNA:   3'- -GCGCgGCGGCggUCG---------ACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 154927 0.66 0.545779
Target:  5'- aCGCGCgCGuuGCUAGCcagagCGUGGggGa -3'
miRNA:   3'- -GCGCG-GCggCGGUCGacg--GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 31033 0.66 0.554274
Target:  5'- gGUGCCGCCuaGCggucgugCGGCUGCguUGCGGAc- -3'
miRNA:   3'- gCGCGGCGG--CG-------GUCGACG--GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 32020 0.66 0.55522
Target:  5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3'
miRNA:   3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 133232 0.66 0.55522
Target:  5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3'
miRNA:   3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5'
24349 3' -64.4 NC_005264.1 + 11861 0.66 0.55901
Target:  5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3'
miRNA:   3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 63003 0.66 0.563757
Target:  5'- aGCGCUucuGCCGCCGaaggcacGgaGUCGgGGggGa -3'
miRNA:   3'- gCGCGG---CGGCGGU-------CgaCGGCgCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 102128 0.66 0.563757
Target:  5'- aCGagGCCGCgGCCAacaaccuGCUGaccuCUGCGGAGGc -3'
miRNA:   3'- -GCg-CGGCGgCGGU-------CGAC----GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 3481 0.66 0.564708
Target:  5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3'
miRNA:   3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 10873 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 107660 0.66 0.564708
Target:  5'- uCGCgGUCGCCGCCuuCaGCCGCGcccaGAGGc -3'
miRNA:   3'- -GCG-CGGCGGCGGucGaCGGCGC----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 145483 1.08 0.000607
Target:  5'- cCGCGCCGCCGCCAGCUGCCGCGGAAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGACGGCGCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.