miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 112253 0.67 0.490388
Target:  5'- aGCGCCggGCUGCuCAGC-GCCGCGu--- -3'
miRNA:   3'- gCGCGG--CGGCG-GUCGaCGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 92165 0.67 0.490388
Target:  5'- gGCGUaaaaauUGCCuGCCGGCggcGCCGCGGc-- -3'
miRNA:   3'- gCGCG------GCGG-CGGUCGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 5536 0.67 0.484988
Target:  5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3'
miRNA:   3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 160647 0.67 0.484988
Target:  5'- gCGCGCaugGgCGCCGGCaauggaggggcaacGCCGCGGGGa -3'
miRNA:   3'- -GCGCGg--CgGCGGUCGa-------------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 135673 0.66 0.517789
Target:  5'- uGCGCCGCCGUgaagaCGGCcUGCa-CGGAc- -3'
miRNA:   3'- gCGCGGCGGCG-----GUCG-ACGgcGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 102865 0.66 0.517789
Target:  5'- uCGCGgccaCCGCCGCgUGGCUGagcggCGCGGAc- -3'
miRNA:   3'- -GCGC----GGCGGCG-GUCGACg----GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 107660 0.66 0.564708
Target:  5'- uCGCgGUCGCCGCCuuCaGCCGCGcccaGAGGc -3'
miRNA:   3'- -GCG-CGGCGGCGGucGaCGGCGC----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 10873 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 3481 0.66 0.564708
Target:  5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3'
miRNA:   3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 102128 0.66 0.563757
Target:  5'- aCGagGCCGCgGCCAacaaccuGCUGaccuCUGCGGAGGc -3'
miRNA:   3'- -GCg-CGGCGgCGGU-------CGAC----GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 63003 0.66 0.563757
Target:  5'- aGCGCUucuGCCGCCGaaggcacGgaGUCGgGGggGa -3'
miRNA:   3'- gCGCGG---CGGCGGU-------CgaCGGCgCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 11861 0.66 0.55901
Target:  5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3'
miRNA:   3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 133232 0.66 0.55522
Target:  5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3'
miRNA:   3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5'
24349 3' -64.4 NC_005264.1 + 32020 0.66 0.55522
Target:  5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3'
miRNA:   3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 31033 0.66 0.554274
Target:  5'- gGUGCCGCCuaGCggucgugCGGCUGCguUGCGGAc- -3'
miRNA:   3'- gCGCGGCGG--CG-------GUCGACG--GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 154927 0.66 0.545779
Target:  5'- aCGCGCgCGuuGCUAGCcagagCGUGGggGa -3'
miRNA:   3'- -GCGCG-GCggCGGUCGacg--GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 83390 0.66 0.545779
Target:  5'- aGCuGCCGCuCGUCGucuGCgcGCCGCGGGu- -3'
miRNA:   3'- gCG-CGGCG-GCGGU---CGa-CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 83247 0.66 0.545779
Target:  5'- --gGCCGCCGCUgaugcGCUGgCGCGGc-- -3'
miRNA:   3'- gcgCGGCGGCGGu----CGACgGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 121206 0.66 0.529853
Target:  5'- cCGCGCUGCCgcaucugGCCAGCcGCUucuacgagcucgucaGCGGGc- -3'
miRNA:   3'- -GCGCGGCGG-------CGGUCGaCGG---------------CGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 5829 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.