Results 141 - 160 of 226 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 133232 | 0.66 | 0.55522 |
Target: 5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3' miRNA: 3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 11861 | 0.66 | 0.55901 |
Target: 5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3' miRNA: 3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 63003 | 0.66 | 0.563757 |
Target: 5'- aGCGCUucuGCCGCCGaaggcacGgaGUCGgGGggGa -3' miRNA: 3'- gCGCGG---CGGCGGU-------CgaCGGCgCCuuC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 102128 | 0.66 | 0.563757 |
Target: 5'- aCGagGCCGCgGCCAacaaccuGCUGaccuCUGCGGAGGc -3' miRNA: 3'- -GCg-CGGCGgCGGU-------CGAC----GGCGCCUUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 3481 | 0.66 | 0.564708 |
Target: 5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3' miRNA: 3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 10873 | 0.66 | 0.564708 |
Target: 5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3' miRNA: 3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 107660 | 0.66 | 0.564708 |
Target: 5'- uCGCgGUCGCCGCCuuCaGCCGCGcccaGAGGc -3' miRNA: 3'- -GCG-CGGCGGCGGucGaCGGCGC----CUUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 83247 | 0.66 | 0.545779 |
Target: 5'- --gGCCGCCGCUgaugcGCUGgCGCGGc-- -3' miRNA: 3'- gcgCGGCGGCGGu----CGACgGCGCCuuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 121206 | 0.66 | 0.529853 |
Target: 5'- cCGCGCUGCCgcaucugGCCAGCcGCUucuacgagcucgucaGCGGGc- -3' miRNA: 3'- -GCGCGGCGG-------CGGUCGaCGG---------------CGCCUuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 78698 | 0.67 | 0.49945 |
Target: 5'- uGCGaCCacuucccgggGCuCGCgAGCUGCCGCGaGAAu -3' miRNA: 3'- gCGC-GG----------CG-GCGgUCGACGGCGC-CUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 84951 | 0.67 | 0.49945 |
Target: 5'- gGCGCCgggugcucgcuuGCgGCCAgGCUGCUGCGuuAGc -3' miRNA: 3'- gCGCGG------------CGgCGGU-CGACGGCGCcuUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 144798 | 0.67 | 0.49945 |
Target: 5'- gGCGCCGCCGCUucGCgucgGCaCGCacuuggugucGGAAa -3' miRNA: 3'- gCGCGGCGGCGGu-CGa---CG-GCG----------CCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 6231 | 0.67 | 0.508584 |
Target: 5'- cCGCgGCCGCCGCgAGacuUGCCGCc---- -3' miRNA: 3'- -GCG-CGGCGGCGgUCg--ACGGCGccuuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 87620 | 0.67 | 0.508584 |
Target: 5'- aCG-GCCGCCGCgCAgggccgauGCaGCCGCGuGggGc -3' miRNA: 3'- -GCgCGGCGGCG-GU--------CGaCGGCGC-CuuC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 126029 | 0.67 | 0.508584 |
Target: 5'- cCGCGCC-UCGCCuGC-GCCGCaGAGa -3' miRNA: 3'- -GCGCGGcGGCGGuCGaCGGCGcCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 4727 | 0.66 | 0.517789 |
Target: 5'- aGaCGCCGCUGCCcGCcgaGCCGgcgucCGGggGu -3' miRNA: 3'- gC-GCGGCGGCGGuCGa--CGGC-----GCCuuC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 54920 | 0.66 | 0.517789 |
Target: 5'- uCGCGgCGCUGCUGGCgaacgGCUGCGa--- -3' miRNA: 3'- -GCGCgGCGGCGGUCGa----CGGCGCcuuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 135673 | 0.66 | 0.517789 |
Target: 5'- uGCGCCGCCGUgaagaCGGCcUGCa-CGGAc- -3' miRNA: 3'- gCGCGGCGGCG-----GUCG-ACGgcGCCUuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 102865 | 0.66 | 0.517789 |
Target: 5'- uCGCGgccaCCGCCGCgUGGCUGagcggCGCGGAc- -3' miRNA: 3'- -GCGC----GGCGGCG-GUCGACg----GCGCCUuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 5829 | 0.66 | 0.527059 |
Target: 5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3' miRNA: 3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home