Results 61 - 80 of 226 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 7050 | 0.67 | 0.481404 |
Target: 5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3' miRNA: 3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 43830 | 0.67 | 0.472501 |
Target: 5'- gCGCGCaaccuGCgGUUauaaagaagggGGCUGCCGCGGGGa -3' miRNA: 3'- -GCGCGg----CGgCGG-----------UCGACGGCGCCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 63003 | 0.66 | 0.563757 |
Target: 5'- aGCGCUucuGCCGCCGaaggcacGgaGUCGgGGggGa -3' miRNA: 3'- gCGCGG---CGGCGGU-------CgaCGGCgCCuuC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 32020 | 0.66 | 0.55522 |
Target: 5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3' miRNA: 3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 83247 | 0.66 | 0.545779 |
Target: 5'- --gGCCGCCGCUgaugcGCUGgCGCGGc-- -3' miRNA: 3'- gcgCGGCGGCGGu----CGACgGCGCCuuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 102865 | 0.66 | 0.517789 |
Target: 5'- uCGCGgccaCCGCCGCgUGGCUGagcggCGCGGAc- -3' miRNA: 3'- -GCGC----GGCGGCG-GUCGACg----GCGCCUuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 87620 | 0.67 | 0.508584 |
Target: 5'- aCG-GCCGCCGCgCAgggccgauGCaGCCGCGuGggGc -3' miRNA: 3'- -GCgCGGCGGCG-GU--------CGaCGGCGC-CuuC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 84951 | 0.67 | 0.49945 |
Target: 5'- gGCGCCgggugcucgcuuGCgGCCAgGCUGCUGCGuuAGc -3' miRNA: 3'- gCGCGG------------CGgCGGU-CGACGGCGCcuUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 3597 | 0.67 | 0.490388 |
Target: 5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3' miRNA: 3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 5536 | 0.67 | 0.484988 |
Target: 5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3' miRNA: 3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 26362 | 0.7 | 0.335853 |
Target: 5'- uGCGCCGCgGCaGGCUG-CGCGGc-- -3' miRNA: 3'- gCGCGGCGgCGgUCGACgGCGCCuuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 36766 | 0.7 | 0.343047 |
Target: 5'- gGCGCCGUCGCCGcUUGCgCGCaGAAu -3' miRNA: 3'- gCGCGGCGGCGGUcGACG-GCGcCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 154072 | 0.67 | 0.469846 |
Target: 5'- cCGCGCCGCCGUagaGGCUcauauggaagaggcGCUuaGGAAc -3' miRNA: 3'- -GCGCGGCGGCGg--UCGA--------------CGGcgCCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 79394 | 0.68 | 0.446305 |
Target: 5'- aGaaCCGCCGCgGGCguggcgagGCCGCGGcGGa -3' miRNA: 3'- gCgcGGCGGCGgUCGa-------CGGCGCCuUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 13205 | 0.68 | 0.436905 |
Target: 5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3' miRNA: 3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 13425 | 0.68 | 0.429299 |
Target: 5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3' miRNA: 3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 25604 | 0.68 | 0.41268 |
Target: 5'- aGCGCCGg-GCCGGC-GuuGCGGAAc -3' miRNA: 3'- gCGCGGCggCGGUCGaCggCGCCUUc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 46407 | 0.68 | 0.402093 |
Target: 5'- uCGCccCCGCgGCCAGacgcccccagcgacCUGCCGCGGGc- -3' miRNA: 3'- -GCGc-GGCGgCGGUC--------------GACGGCGCCUuc -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 92697 | 0.69 | 0.372924 |
Target: 5'- gGCGCCGCCGCggCAGCaaGCaCGuuGAGGg -3' miRNA: 3'- gCGCGGCGGCG--GUCGa-CG-GCgcCUUC- -5' |
|||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 95329 | 0.69 | 0.357767 |
Target: 5'- -uUGCCGCCGCCgGGC-GCCGCGa--- -3' miRNA: 3'- gcGCGGCGGCGG-UCGaCGGCGCcuuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home