miRNA display CGI


Results 81 - 100 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 90964 0.68 0.446305
Target:  5'- uGCGUCGggcgcCCGCguGCcGUCGCGGAAc -3'
miRNA:   3'- gCGCGGC-----GGCGguCGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 30843 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 154528 0.68 0.429299
Target:  5'- gCGCGCaaacaaGCgUGCCGGCgaugGCaCGCGGAu- -3'
miRNA:   3'- -GCGCGg-----CG-GCGGUCGa---CG-GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 155960 0.68 0.428458
Target:  5'- uGCGCgGCucgcggaCGCUcuGGCUGCCGuCGGGAu -3'
miRNA:   3'- gCGCGgCG-------GCGG--UCGACGGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 73472 0.68 0.41268
Target:  5'- gGCGCuUGCCGUCAGgaagGCC-CGGGAGa -3'
miRNA:   3'- gCGCG-GCGGCGGUCga--CGGcGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 92697 0.69 0.372924
Target:  5'- gGCGCCGCCGCggCAGCaaGCaCGuuGAGGg -3'
miRNA:   3'- gCGCGGCGGCG--GUCGa-CG-GCgcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 95329 0.69 0.357767
Target:  5'- -uUGCCGCCGCCgGGC-GCCGCGa--- -3'
miRNA:   3'- gcGCGGCGGCGG-UCGaCGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 5536 0.67 0.484988
Target:  5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3'
miRNA:   3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 3597 0.67 0.490388
Target:  5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3'
miRNA:   3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 84951 0.67 0.49945
Target:  5'- gGCGCCgggugcucgcuuGCgGCCAgGCUGCUGCGuuAGc -3'
miRNA:   3'- gCGCGG------------CGgCGGU-CGACGGCGCcuUC- -5'
24349 3' -64.4 NC_005264.1 + 4589 0.7 0.308184
Target:  5'- aCGCagGCCcuccCCGCCAGC-GCCGCGGcGGc -3'
miRNA:   3'- -GCG--CGGc---GGCGGUCGaCGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 40741 0.71 0.288598
Target:  5'- uCG-GCCGCCGCCAGUcGCgGCGaGAc- -3'
miRNA:   3'- -GCgCGGCGGCGGUCGaCGgCGC-CUuc -5'
24349 3' -64.4 NC_005264.1 + 30375 0.71 0.276092
Target:  5'- gGCGCCGCCGCgucgcgucuCGGCgGCgGCGGu-- -3'
miRNA:   3'- gCGCGGCGGCG---------GUCGaCGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 154614 0.72 0.252385
Target:  5'- cCGCGCUGgCGuacucggaCCAGCgGCCGCGGGGc -3'
miRNA:   3'- -GCGCGGCgGC--------GGUCGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 55643 0.72 0.241174
Target:  5'- gCGCGCCGCCGCCuuuaguuuuGGCgGCCcCGGu-- -3'
miRNA:   3'- -GCGCGGCGGCGG---------UCGaCGGcGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 63003 0.66 0.563757
Target:  5'- aGCGCUucuGCCGCCGaaggcacGgaGUCGgGGggGa -3'
miRNA:   3'- gCGCGG---CGGCGGU-------CgaCGGCgCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 32020 0.66 0.55522
Target:  5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3'
miRNA:   3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 83247 0.66 0.545779
Target:  5'- --gGCCGCCGCUgaugcGCUGgCGCGGc-- -3'
miRNA:   3'- gcgCGGCGGCGGu----CGACgGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 102865 0.66 0.517789
Target:  5'- uCGCGgccaCCGCCGCgUGGCUGagcggCGCGGAc- -3'
miRNA:   3'- -GCGC----GGCGGCG-GUCGACg----GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 87620 0.67 0.508584
Target:  5'- aCG-GCCGCCGCgCAgggccgauGCaGCCGCGuGggGc -3'
miRNA:   3'- -GCgCGGCGGCG-GU--------CGaCGGCGC-CuuC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.