miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 102215 0.74 0.18239
Target:  5'- aGCuGCUGCUccugcgcgaGCCGGCUGCCGCGGc-- -3'
miRNA:   3'- gCG-CGGCGG---------CGGUCGACGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 141996 0.74 0.169818
Target:  5'- uCGCGCagCGCCGUCGuaUGCCGCGGcAGa -3'
miRNA:   3'- -GCGCG--GCGGCGGUcgACGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 37361 0.76 0.143459
Target:  5'- cCGCGCCGCCgaggaguucuccGCCAGCgacgccGCCGCGaGAGu -3'
miRNA:   3'- -GCGCGGCGG------------CGGUCGa-----CGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 18163 0.69 0.365291
Target:  5'- uCGuCGUCGgCGCCA-CUGUCGUGGggGc -3'
miRNA:   3'- -GC-GCGGCgGCGGUcGACGGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 39207 0.76 0.13335
Target:  5'- aCGCGCCuacGCCGCCGcggcGCUGgCGgGGAGGg -3'
miRNA:   3'- -GCGCGG---CGGCGGU----CGACgGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 78698 0.67 0.49945
Target:  5'- uGCGaCCacuucccgggGCuCGCgAGCUGCCGCGaGAAu -3'
miRNA:   3'- gCGC-GG----------CG-GCGgUCGACGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 3597 0.67 0.490388
Target:  5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3'
miRNA:   3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 136193 0.67 0.481404
Target:  5'- aGCGCgG-CGCCGGC-GCCGCGcuAAGg -3'
miRNA:   3'- gCGCGgCgGCGGUCGaCGGCGCc-UUC- -5'
24349 3' -64.4 NC_005264.1 + 7050 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 39832 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 94512 0.67 0.472501
Target:  5'- aGUGCaGCCGUCGGCca-CGUGGGAGg -3'
miRNA:   3'- gCGCGgCGGCGGUCGacgGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 46407 0.68 0.402093
Target:  5'- uCGCccCCGCgGCCAGacgcccccagcgacCUGCCGCGGGc- -3'
miRNA:   3'- -GCGc-GGCGgCGGUC--------------GACGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 77739 0.68 0.437755
Target:  5'- uGCGCCGagggacUCGCCGGCcaccacaaacggUGCgGCGGAc- -3'
miRNA:   3'- gCGCGGC------GGCGGUCG------------ACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 30843 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 96613 0.68 0.429299
Target:  5'- gGC-CCGCagcuCGCCAaguccuucGCUgGCCGCGGAGGc -3'
miRNA:   3'- gCGcGGCG----GCGGU--------CGA-CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 155960 0.68 0.428458
Target:  5'- uGCGCgGCucgcggaCGCUcuGGCUGCCGuCGGGAu -3'
miRNA:   3'- gCGCGgCG-------GCGG--UCGACGGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 37996 0.69 0.395664
Target:  5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3'
miRNA:   3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 161292 0.68 0.437755
Target:  5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3'
miRNA:   3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 52944 0.68 0.437755
Target:  5'- cCGCGcCCGCgGCgCAuuGC-GCCGCGGGGu -3'
miRNA:   3'- -GCGC-GGCGgCG-GU--CGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 18060 0.71 0.295016
Target:  5'- gGCGCCGCgaGCCAGg-GCgCGCGGGc- -3'
miRNA:   3'- gCGCGGCGg-CGGUCgaCG-GCGCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.