miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 64170 0.66 0.564708
Target:  5'- uGUGCaagCGCCGCCAGCacuggGUCGagcaGGAAc -3'
miRNA:   3'- gCGCG---GCGGCGGUCGa----CGGCg---CCUUc -5'
24349 3' -64.4 NC_005264.1 + 156892 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 158234 0.76 0.13335
Target:  5'- aCGCGCCuacGCCGCCGcggcGCUGgCGgGGAGGg -3'
miRNA:   3'- -GCGCGG---CGGCGGU----CGACgGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 161292 0.68 0.437755
Target:  5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3'
miRNA:   3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 52944 0.68 0.437755
Target:  5'- cCGCGcCCGCgGCgCAuuGC-GCCGCGGGGu -3'
miRNA:   3'- -GCGC-GGCGgCG-GU--CGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 132232 0.68 0.436905
Target:  5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3'
miRNA:   3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 121880 0.73 0.200427
Target:  5'- uCGCGCCGUCGCCcGCUGCgGCu---- -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACGgCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 26498 0.73 0.210016
Target:  5'- uGCGgCGCCGaaCCAGCUucuacGCCGCGGcGGg -3'
miRNA:   3'- gCGCgGCGGC--GGUCGA-----CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 155842 0.71 0.295016
Target:  5'- --aGCCGCCGCgGGCcacGCCGaGGAGGa -3'
miRNA:   3'- gcgCGGCGGCGgUCGa--CGGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 159767 0.71 0.288598
Target:  5'- uCG-GCCGCCGCCAGUcGCgGCGaGAc- -3'
miRNA:   3'- -GCgCGGCGGCGGUCGaCGgCGC-CUuc -5'
24349 3' -64.4 NC_005264.1 + 34752 0.71 0.28229
Target:  5'- gCGCGCCgGUCGCC-GCUGUCGCuacacGAAGa -3'
miRNA:   3'- -GCGCGG-CGGCGGuCGACGGCGc----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 149402 0.71 0.276092
Target:  5'- gGCGCCGCCGCgucgcgucuCGGCgGCgGCGGu-- -3'
miRNA:   3'- gCGCGGCGGCG---------GUCGaCGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 62742 0.66 0.564708
Target:  5'- cCGCGUCGUCGCUgAGCc-CCGCGGc-- -3'
miRNA:   3'- -GCGCGGCGGCGG-UCGacGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 129899 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 6832 0.68 0.429299
Target:  5'- aGCGUCGCCgggcguaccuuGCUGGUUGCCG-GGAAc -3'
miRNA:   3'- gCGCGGCGG-----------CGGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 159686 0.68 0.437755
Target:  5'- aGgGUCGCCGUuuCGGUUGCCGCcaGGAc- -3'
miRNA:   3'- gCgCGGCGGCG--GUCGACGGCG--CCUuc -5'
24349 3' -64.4 NC_005264.1 + 87510 0.66 0.564708
Target:  5'- aCGCGCUGUUaCCGGCacugGCgCGCGGcAGa -3'
miRNA:   3'- -GCGCGGCGGcGGUCGa---CG-GCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 120171 0.68 0.425943
Target:  5'- gGCGCacgggacgauccgGCCGCCAGuCUGCCGgcgcgcgaUGGggGu -3'
miRNA:   3'- gCGCGg------------CGGCGGUC-GACGGC--------GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 132452 0.68 0.429299
Target:  5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3'
miRNA:   3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5'
24349 3' -64.4 NC_005264.1 + 136360 0.68 0.429299
Target:  5'- gGCGCugggCGCUGCCGGCgcgaauagcGCUGUGGAGc -3'
miRNA:   3'- gCGCG----GCGGCGGUCGa--------CGGCGCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.