miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 20151 0.65 0.573283
Target:  5'- gGCG-CGCCGCCGGC-GCCcaagaucGCGGc-- -3'
miRNA:   3'- gCGCgGCGGCGGUCGaCGG-------CGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 31173 0.66 0.536391
Target:  5'- aCGUGCCGCCaaCGGUcugGCgGCGGGc- -3'
miRNA:   3'- -GCGCGGCGGcgGUCGa--CGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 57996 0.66 0.564708
Target:  5'- gGCgGCCGUgGCuCAGCgGCCccgGCGGAc- -3'
miRNA:   3'- gCG-CGGCGgCG-GUCGaCGG---CGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 138439 0.66 0.517789
Target:  5'- uCGCGCUGCuCGCgAucuaccucGCcGCCGgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGgU--------CGaCGGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 6288 0.66 0.564708
Target:  5'- aGCGCCGagcucucCCAGCUGCacuugCGCGGcGAGg -3'
miRNA:   3'- gCGCGGCggc----GGUCGACG-----GCGCC-UUC- -5'
24349 3' -64.4 NC_005264.1 + 150060 0.66 0.554274
Target:  5'- gGUGCCGCCuaGCggucgugCGGCUGCguUGCGGAc- -3'
miRNA:   3'- gCGCGGCGG--CG-------GUCGACG--GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 31120 0.66 0.564708
Target:  5'- aGCGCCacgagCGCCAGCaacGCCGCGcAGGc -3'
miRNA:   3'- gCGCGGcg---GCGGUCGa--CGGCGCcUUC- -5'
24349 3' -64.4 NC_005264.1 + 106254 0.66 0.527059
Target:  5'- gGCGCuCG-CGCCuGCUGaCgGCGGAu- -3'
miRNA:   3'- gCGCG-GCgGCGGuCGAC-GgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 36073 0.66 0.536391
Target:  5'- aCGUGCUGCCGUC-GCUGUcccucucuucggCGCGGcuGg -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACG------------GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 151047 0.66 0.55522
Target:  5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3'
miRNA:   3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 91079 0.66 0.552383
Target:  5'- gGCGCCaGCaggucgGCUagucguaacgcgauGGCUGUCGCGGAGu -3'
miRNA:   3'- gCGCGG-CGg-----CGG--------------UCGACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 37547 0.66 0.527059
Target:  5'- aGCGUCaGgCGaagcgaCAGCgcgccGCCGCGGAGGg -3'
miRNA:   3'- gCGCGG-CgGCg-----GUCGa----CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 42132 0.66 0.536391
Target:  5'- cCGC-CCGaCCGCCGGCuuUGUCgGCGcGAGGc -3'
miRNA:   3'- -GCGcGGC-GGCGGUCG--ACGG-CGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 29460 0.66 0.527059
Target:  5'- uGCGCCGCCGCgAuGaCUcucGCCGagucgucgaGGAGGg -3'
miRNA:   3'- gCGCGGCGGCGgU-C-GA---CGGCg--------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 118053 0.66 0.527059
Target:  5'- gGCGaCCGCggCGUCGGCaacgaucGCCGCGGGc- -3'
miRNA:   3'- gCGC-GGCG--GCGGUCGa------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 79914 0.66 0.536391
Target:  5'- gCGCGUgGCCGaCGuCUGCgGCGGAc- -3'
miRNA:   3'- -GCGCGgCGGCgGUcGACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 124855 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 123753 0.66 0.517789
Target:  5'- aGaCGCCGCUGCCcGCcgaGCCGgcgucCGGggGu -3'
miRNA:   3'- gC-GCGGCGGCGGuCGa--CGGC-----GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 54943 0.66 0.564708
Target:  5'- aGCGCauacgcaccgCGCCGCUAGCUGCCa------ -3'
miRNA:   3'- gCGCG----------GCGGCGGUCGACGGcgccuuc -5'
24349 3' -64.4 NC_005264.1 + 130887 0.66 0.55901
Target:  5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3'
miRNA:   3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.