miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 145483 1.08 0.000607
Target:  5'- cCGCGCCGCCGCCAGCUGCCGCGGAAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGACGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 34989 0.86 0.028419
Target:  5'- gCGCGCCGgguucuagaCCGCCGGCcGCCGCGGAGGc -3'
miRNA:   3'- -GCGCGGC---------GGCGGUCGaCGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 25556 0.81 0.059886
Target:  5'- cCGCGUCGCCGCCAaC-GCCGCGGAAu -3'
miRNA:   3'- -GCGCGGCGGCGGUcGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 20350 0.78 0.101659
Target:  5'- aCGCGCCG-UGCCAGC-GUCGUGGGAGa -3'
miRNA:   3'- -GCGCGGCgGCGGUCGaCGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 149436 0.77 0.112266
Target:  5'- gCGCGCCGgUGCggagAGCUGCgGCGGAGGa -3'
miRNA:   3'- -GCGCGGCgGCGg---UCGACGgCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 30409 0.77 0.112266
Target:  5'- gCGCGCCGgUGCggagAGCUGCgGCGGAGGa -3'
miRNA:   3'- -GCGCGGCgGCGg---UCGACGgCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 97441 0.77 0.11708
Target:  5'- gGCGCCGCCGCggaucugauagacgUAGC-GCCGCuGGAAGa -3'
miRNA:   3'- gCGCGGCGGCG--------------GUCGaCGGCG-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 43668 0.77 0.117949
Target:  5'- gCGCGCUGCgCGCCGGCguuaaggcgGCCGCcgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGGUCGa--------CGGCG--CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 162694 0.77 0.117949
Target:  5'- gCGCGCUGCgCGCCGGCguuaaggcgGCCGCcgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGGUCGa--------CGGCG--CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 39207 0.76 0.13335
Target:  5'- aCGCGCCuacGCCGCCGcggcGCUGgCGgGGAGGg -3'
miRNA:   3'- -GCGCGG---CGGCGGU----CGACgGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 158234 0.76 0.13335
Target:  5'- aCGCGCCuacGCCGCCGcggcGCUGgCGgGGAGGg -3'
miRNA:   3'- -GCGCGG---CGGCGGU----CGACgGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 156388 0.76 0.143459
Target:  5'- cCGCGCCGCCgaggaguucuccGCCAGCgacgccGCCGCGaGAGu -3'
miRNA:   3'- -GCGCGGCGG------------CGGUCGa-----CGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 37361 0.76 0.143459
Target:  5'- cCGCGCCGCCgaggaguucuccGCCAGCgacgccGCCGCGaGAGu -3'
miRNA:   3'- -GCGCGGCGG------------CGGUCGa-----CGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 75397 0.75 0.165803
Target:  5'- gCGCGCCaCCGUCuGCgcgGCCGCGGGc- -3'
miRNA:   3'- -GCGCGGcGGCGGuCGa--CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 141996 0.74 0.169818
Target:  5'- uCGCGCagCGCCGUCGuaUGCCGCGGcAGa -3'
miRNA:   3'- -GCGCG--GCGGCGGUcgACGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 136463 0.74 0.17811
Target:  5'- cCGCGCucagagacggCGCCGCgCAGcCUGCCGCGGc-- -3'
miRNA:   3'- -GCGCG----------GCGGCG-GUC-GACGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 102215 0.74 0.18239
Target:  5'- aGCuGCUGCUccugcgcgaGCCGGCUGCCGCGGc-- -3'
miRNA:   3'- gCG-CGGCGG---------CGGUCGACGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 66609 0.74 0.18239
Target:  5'- uGCGCCGCguUGCCGGCgccGUCGCGGcccGAGg -3'
miRNA:   3'- gCGCGGCG--GCGGUCGa--CGGCGCC---UUC- -5'
24349 3' -64.4 NC_005264.1 + 72021 0.74 0.186319
Target:  5'- uGCGCgGCCGCCAcacgcgagacguGCUGaccuccaUCGCGGAAGa -3'
miRNA:   3'- gCGCGgCGGCGGU------------CGAC-------GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 137972 0.73 0.199958
Target:  5'- uCGUGCCGCC-CCGGCUccgguaagacuucGCCguGCGGAAGc -3'
miRNA:   3'- -GCGCGGCGGcGGUCGA-------------CGG--CGCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.