miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 1144 0.68 0.425943
Target:  5'- gGCGCacgggacgauccgGCCGCCAGuCUGCCGgcgcgcgaUGGggGu -3'
miRNA:   3'- gCGCGg------------CGGCGGUC-GACGGC--------GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 1205 0.67 0.463681
Target:  5'- gGCGuCCGCgGCCAug-GCUGCGGGGu -3'
miRNA:   3'- gCGC-GGCGgCGGUcgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 2399 0.72 0.246727
Target:  5'- aGC-CCGgCGCCGGcCUGCCuaGGAAGa -3'
miRNA:   3'- gCGcGGCgGCGGUC-GACGGcgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 2854 0.73 0.200427
Target:  5'- uCGCGCCGUCGCCcGCUGCgGCu---- -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACGgCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 3481 0.66 0.564708
Target:  5'- uGgGCuUGCCGCC-GCacGCgGCGGggGg -3'
miRNA:   3'- gCgCG-GCGGCGGuCGa-CGgCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 3597 0.67 0.490388
Target:  5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3'
miRNA:   3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 4589 0.7 0.308184
Target:  5'- aCGCagGCCcuccCCGCCAGC-GCCGCGGcGGc -3'
miRNA:   3'- -GCG--CGGc---GGCGGUCGaCGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 4727 0.66 0.517789
Target:  5'- aGaCGCCGCUGCCcGCcgaGCCGgcgucCGGggGu -3'
miRNA:   3'- gC-GCGGCGGCGGuCGa--CGGC-----GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 5436 0.67 0.490388
Target:  5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3'
miRNA:   3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 5536 0.67 0.484988
Target:  5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3'
miRNA:   3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 5829 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 6231 0.67 0.508584
Target:  5'- cCGCgGCCGCCGCgAGacuUGCCGCc---- -3'
miRNA:   3'- -GCG-CGGCGGCGgUCg--ACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 6288 0.66 0.564708
Target:  5'- aGCGCCGagcucucCCAGCUGCacuugCGCGGcGAGg -3'
miRNA:   3'- gCGCGGCggc----GGUCGACG-----GCGCC-UUC- -5'
24349 3' -64.4 NC_005264.1 + 6832 0.68 0.429299
Target:  5'- aGCGUCGCCgggcguaccuuGCUGGUUGCCG-GGAAc -3'
miRNA:   3'- gCGCGGCGG-----------CGGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 7050 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 9713 0.7 0.308184
Target:  5'- uCGCGCCGCUgaGCCAuuguGCccGCCGCGGc-- -3'
miRNA:   3'- -GCGCGGCGG--CGGU----CGa-CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 10538 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 10873 0.66 0.564708
Target:  5'- -aUGCUGCUGCgAGggGCCGUGGGGa -3'
miRNA:   3'- gcGCGGCGGCGgUCgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 10990 0.71 0.276092
Target:  5'- aCGUGUCGCCGCCGGa-GCgGCGGc-- -3'
miRNA:   3'- -GCGCGGCGGCGGUCgaCGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 11861 0.66 0.55901
Target:  5'- cCGuCGCCGCCacucgcgagcucagaGCCgAGCcgcgaggGCCGUGGGAa -3'
miRNA:   3'- -GC-GCGGCGG---------------CGG-UCGa------CGGCGCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.