miRNA display CGI


Results 21 - 40 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 133232 0.66 0.55522
Target:  5'- uGCGCCGCCGCgCuacGCUucgaucuggaGCCGCaGGc- -3'
miRNA:   3'- gCGCGGCGGCG-Gu--CGA----------CGGCGcCUuc -5'
24349 3' -64.4 NC_005264.1 + 150060 0.66 0.554274
Target:  5'- gGUGCCGCCuaGCggucgugCGGCUGCguUGCGGAc- -3'
miRNA:   3'- gCGCGGCGG--CG-------GUCGACG--GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 31033 0.66 0.554274
Target:  5'- gGUGCCGCCuaGCggucgugCGGCUGCguUGCGGAc- -3'
miRNA:   3'- gCGCGGCGG--CG-------GUCGACG--GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 91079 0.66 0.552383
Target:  5'- gGCGCCaGCaggucgGCUagucguaacgcgauGGCUGUCGCGGAGu -3'
miRNA:   3'- gCGCGG-CGg-----CGG--------------UCGACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 83247 0.66 0.545779
Target:  5'- --gGCCGCCGCUgaugcGCUGgCGCGGc-- -3'
miRNA:   3'- gcgCGGCGGCGGu----CGACgGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 83390 0.66 0.545779
Target:  5'- aGCuGCCGCuCGUCGucuGCgcGCCGCGGGu- -3'
miRNA:   3'- gCG-CGGCG-GCGGU---CGa-CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 154927 0.66 0.545779
Target:  5'- aCGCGCgCGuuGCUAGCcagagCGUGGggGa -3'
miRNA:   3'- -GCGCG-GCggCGGUCGacg--GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 42132 0.66 0.536391
Target:  5'- cCGC-CCGaCCGCCGGCuuUGUCgGCGcGAGGc -3'
miRNA:   3'- -GCGcGGC-GGCGGUCG--ACGG-CGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 79914 0.66 0.536391
Target:  5'- gCGCGUgGCCGaCGuCUGCgGCGGAc- -3'
miRNA:   3'- -GCGCGgCGGCgGUcGACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 36073 0.66 0.536391
Target:  5'- aCGUGCUGCCGUC-GCUGUcccucucuucggCGCGGcuGg -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACG------------GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 31173 0.66 0.536391
Target:  5'- aCGUGCCGCCaaCGGUcugGCgGCGGGc- -3'
miRNA:   3'- -GCGCGGCGGcgGUCGa--CGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 121206 0.66 0.529853
Target:  5'- cCGCGCUGCCgcaucugGCCAGCcGCUucuacgagcucgucaGCGGGc- -3'
miRNA:   3'- -GCGCGGCGG-------CGGUCGaCGG---------------CGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 5829 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 37547 0.66 0.527059
Target:  5'- aGCGUCaGgCGaagcgaCAGCgcgccGCCGCGGAGGg -3'
miRNA:   3'- gCGCGG-CgGCg-----GUCGa----CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 29460 0.66 0.527059
Target:  5'- uGCGCCGCCGCgAuGaCUcucGCCGagucgucgaGGAGGg -3'
miRNA:   3'- gCGCGGCGGCGgU-C-GA---CGGCg--------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 106254 0.66 0.527059
Target:  5'- gGCGCuCG-CGCCuGCUGaCgGCGGAu- -3'
miRNA:   3'- gCGCG-GCgGCGGuCGAC-GgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 118053 0.66 0.527059
Target:  5'- gGCGaCCGCggCGUCGGCaacgaucGCCGCGGGc- -3'
miRNA:   3'- gCGC-GGCG--GCGGUCGa------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 124855 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 104578 0.66 0.52149
Target:  5'- aGCGCCauGCCGCCcacgggaucgggccgAGUgaGCaGCGGAAGg -3'
miRNA:   3'- gCGCGG--CGGCGG---------------UCGa-CGgCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 138439 0.66 0.517789
Target:  5'- uCGCGCUGCuCGCgAucuaccucGCcGCCGgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGgU--------CGaCGGCgCCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.