Results 1 - 20 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 5' | -54.9 | NC_005264.1 | + | 79224 | 0.66 | 0.947441 |
Target: 5'- uGCGUgCA-GGCGGCGGcGggGguGUc -3' miRNA: 3'- cUGCAgGUgCCGUUGCCuCuuCguCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 56237 | 0.66 | 0.933427 |
Target: 5'- aGCGUCgCGCGGCuuuUGucGAGGUGGCg -3' miRNA: 3'- cUGCAG-GUGCCGuu-GCcuCUUCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 47915 | 0.66 | 0.933427 |
Target: 5'- cACGUgugcCCGCGGagccuuauCGACGGAGAA-CGGCu -3' miRNA: 3'- cUGCA----GGUGCC--------GUUGCCUCUUcGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 98922 | 0.66 | 0.94255 |
Target: 5'- aGAUGUCUuccacgcggcacgGCGGCAACuuucaguuGGAGcucGCAGCc -3' miRNA: 3'- -CUGCAGG-------------UGCCGUUG--------CCUCuu-CGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 30492 | 0.66 | 0.947441 |
Target: 5'- uGACGUaCA-GGUAGCGaggccauugcGGGAAGCGGCu -3' miRNA: 3'- -CUGCAgGUgCCGUUGC----------CUCUUCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 157282 | 0.66 | 0.931908 |
Target: 5'- -cUGUCCGCGGUGcuguCGGuGAcgucagucccggacGGCGGCg -3' miRNA: 3'- cuGCAGGUGCCGUu---GCCuCU--------------UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 33713 | 0.66 | 0.943007 |
Target: 5'- cGCGUCUGCGcGUAgaaacccugaucAgGGAGGAGCuGCu -3' miRNA: 3'- cUGCAGGUGC-CGU------------UgCCUCUUCGuCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 7945 | 0.66 | 0.933427 |
Target: 5'- -uCGUCCACGGCcGCGGcgucuuuGucGCuGCc -3' miRNA: 3'- cuGCAGGUGCCGuUGCCu------CuuCGuCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 37087 | 0.66 | 0.943007 |
Target: 5'- cGACG-CgGCGGCAGuucCGGGGA--CGGCg -3' miRNA: 3'- -CUGCaGgUGCCGUU---GCCUCUucGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 132344 | 0.66 | 0.947441 |
Target: 5'- gGACGgCCGCGcGgAGCaGGAGGAGaggGGCg -3' miRNA: 3'- -CUGCaGGUGC-CgUUG-CCUCUUCg--UCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 65548 | 0.66 | 0.943007 |
Target: 5'- cGCGUCaaauUGGCuGCGcGAGGcAGCGGCc -3' miRNA: 3'- cUGCAGgu--GCCGuUGC-CUCU-UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 135929 | 0.66 | 0.943007 |
Target: 5'- aACGUUCGauUGGCAcagGCGGccGGggGCgAGCg -3' miRNA: 3'- cUGCAGGU--GCCGU---UGCC--UCuuCG-UCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 43400 | 0.66 | 0.947441 |
Target: 5'- gGGCGgCCugGGCAGC-GAGAucgcccgccAGCcGCg -3' miRNA: 3'- -CUGCaGGugCCGUUGcCUCU---------UCGuCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 113951 | 0.66 | 0.944809 |
Target: 5'- cGCGUgCCGCuuucucggacgugaaGGCAccgGCGaGAGAuggAGCAGCg -3' miRNA: 3'- cUGCA-GGUG---------------CCGU---UGC-CUCU---UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 62223 | 0.66 | 0.951641 |
Target: 5'- cGCGcUCCGCGGCcgcuuCGGGGucGuCGGUa -3' miRNA: 3'- cUGC-AGGUGCCGuu---GCCUCuuC-GUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 122708 | 0.66 | 0.951641 |
Target: 5'- -cCGUCUcgGCGGCGAgacgaGGAGGA-CGGCg -3' miRNA: 3'- cuGCAGG--UGCCGUUg----CCUCUUcGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 69152 | 0.66 | 0.951641 |
Target: 5'- cGCGcuacugCCACGGUAagcGCGGuGAucauGGCAGUu -3' miRNA: 3'- cUGCa-----GGUGCCGU---UGCCuCU----UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 104453 | 0.66 | 0.947441 |
Target: 5'- aAUGgCCACGGCGAU--AGAGGCGGg -3' miRNA: 3'- cUGCaGGUGCCGUUGccUCUUCGUCg -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 82326 | 0.66 | 0.951641 |
Target: 5'- cGACGUugcgcaCCGCGGCGAuguucucgcucuCGGccuuGGCGGCg -3' miRNA: 3'- -CUGCA------GGUGCCGUU------------GCCucu-UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 127318 | 0.66 | 0.938336 |
Target: 5'- aGGCGcCCgugGGCGACGGGGGcaccugcgccGCGGCg -3' miRNA: 3'- -CUGCaGGug-CCGUUGCCUCUu---------CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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