miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 1168 0.67 0.911394
Target:  5'- --aGUCUgccgGCGcGCGAUGGGGGuacGCAGCg -3'
miRNA:   3'- cugCAGG----UGC-CGUUGCCUCUu--CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 1204 0.75 0.499033
Target:  5'- gGGCGUCCGCGGCcauggcuGCGGGGuuGCAc- -3'
miRNA:   3'- -CUGCAGGUGCCGu------UGCCUCuuCGUcg -5'
24349 5' -54.9 NC_005264.1 + 3179 0.69 0.831949
Target:  5'- cGCGUCgCgACGGC-GCGGGGAAG-GGCu -3'
miRNA:   3'- cUGCAG-G-UGCCGuUGCCUCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 3284 0.79 0.341955
Target:  5'- cACGUcCCugGGCGACGGGGAgugAGgGGCu -3'
miRNA:   3'- cUGCA-GGugCCGUUGCCUCU---UCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 3681 0.66 0.951641
Target:  5'- -cCGUCUcgGCGGCGAgacgaGGAGGA-CGGCg -3'
miRNA:   3'- cuGCAGG--UGCCGUUg----CCUCUUcGUCG- -5'
24349 5' -54.9 NC_005264.1 + 4095 0.68 0.863834
Target:  5'- cGGCGU-CGCGGCAcgACGGGgccGAGGguGUc -3'
miRNA:   3'- -CUGCAgGUGCCGU--UGCCU---CUUCguCG- -5'
24349 5' -54.9 NC_005264.1 + 4168 0.72 0.700954
Target:  5'- cACG-CCGCGGUGugGG-GAAGCGGa -3'
miRNA:   3'- cUGCaGGUGCCGUugCCuCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 4518 0.79 0.334341
Target:  5'- gGGCGUCCGCGGaGGgGGAGggGUGGUc -3'
miRNA:   3'- -CUGCAGGUGCCgUUgCCUCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 5246 0.69 0.856161
Target:  5'- gGACGcccUgCugGGCuACGGGGAAGC-GCc -3'
miRNA:   3'- -CUGC---AgGugCCGuUGCCUCUUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 5268 0.76 0.479898
Target:  5'- aGGCGagUCGCGGCcgGACGGcGggGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG--UUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 6425 0.7 0.805208
Target:  5'- cACGUacacucUCGCGGCGgcgucgcugGCGGAGAacuccucGGCGGCg -3'
miRNA:   3'- cUGCA------GGUGCCGU---------UGCCUCU-------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 7269 0.71 0.750356
Target:  5'- aGACGUagCCuuGGCGACGGAGAGccccGcCAGUg -3'
miRNA:   3'- -CUGCA--GGugCCGUUGCCUCUU----C-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 7945 0.66 0.933427
Target:  5'- -uCGUCCACGGCcGCGGcgucuuuGucGCuGCc -3'
miRNA:   3'- cuGCAGGUGCCGuUGCCu------CuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 8291 0.66 0.938336
Target:  5'- aGGCGcCCgugGGCGACGGGGGcaccugcgccGCGGCg -3'
miRNA:   3'- -CUGCaGGug-CCGUUGCCUCUu---------CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 9882 0.74 0.578493
Target:  5'- cGGCGcgCCACGGCcuucccagcccuGGCGGcAGAaaGGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG------------UUGCC-UCU--UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 10717 0.71 0.720954
Target:  5'- cGCGUCaGCGaGCAagcaaGCGGGGAaacgAGCGGCg -3'
miRNA:   3'- cUGCAGgUGC-CGU-----UGCCUCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 13317 0.66 0.947441
Target:  5'- gGACGgCCGCGcGgAGCaGGAGGAGaggGGCg -3'
miRNA:   3'- -CUGCaGGUGC-CgUUG-CCUCUUCg--UCG- -5'
24349 5' -54.9 NC_005264.1 + 13443 0.69 0.840212
Target:  5'- aGACGcgaCGCGGCGGCGccGAAGgGGCu -3'
miRNA:   3'- -CUGCag-GUGCCGUUGCcuCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 13606 0.69 0.840212
Target:  5'- cGGCGaUCGCGGUcgggacGCGGgcAGggGCGGCg -3'
miRNA:   3'- -CUGCaGGUGCCGu-----UGCC--UCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 13691 0.67 0.911394
Target:  5'- -cCG-CCAUGGCccAgGGAGAacuGGCAGCu -3'
miRNA:   3'- cuGCaGGUGCCGu-UgCCUCU---UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.