miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 161975 0.7 0.806095
Target:  5'- uACGUCCgggcGCGGCAAcgccuCGGAGggGgaaaGGCc -3'
miRNA:   3'- cUGCAGG----UGCCGUU-----GCCUCuuCg---UCG- -5'
24349 5' -54.9 NC_005264.1 + 129743 0.71 0.720954
Target:  5'- cGCGUCaGCGaGCAagcaaGCGGGGAaacgAGCGGCg -3'
miRNA:   3'- cUGCAGgUGC-CGU-----UGCCUCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 16198 0.71 0.730843
Target:  5'- uGCGUCUAcCGGaCAACGGGGGAcGCGccGCg -3'
miRNA:   3'- cUGCAGGU-GCC-GUUGCCUCUU-CGU--CG- -5'
24349 5' -54.9 NC_005264.1 + 65386 0.71 0.740647
Target:  5'- --aGUCuCGCaGGCGACGGAGguGCGGg -3'
miRNA:   3'- cugCAG-GUG-CCGUUGCCUCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 7269 0.71 0.750356
Target:  5'- aGACGUagCCuuGGCGACGGAGAGccccGcCAGUg -3'
miRNA:   3'- -CUGCA--GGugCCGUUGCCUCUU----C-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 91892 0.71 0.759961
Target:  5'- gGugGUuggCCGCGGCAGCGaugggcGGgcGCGGCg -3'
miRNA:   3'- -CugCA---GGUGCCGUUGCc-----UCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 117301 0.71 0.759961
Target:  5'- cGAUGccgcucUCCGCGuGCGACuGAGAAGCGuGCg -3'
miRNA:   3'- -CUGC------AGGUGC-CGUUGcCUCUUCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 17340 0.7 0.778819
Target:  5'- gGACGucugcagugccuUCCGCGGCAGCuGGc--GGCGGCg -3'
miRNA:   3'- -CUGC------------AGGUGCCGUUG-CCucuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 125452 0.7 0.805208
Target:  5'- cACGUacacucUCGCGGCGgcgucgcugGCGGAGAacuccucGGCGGCg -3'
miRNA:   3'- cUGCA------GGUGCCGU---------UGCCUCU-------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 123195 0.72 0.700954
Target:  5'- cACG-CCGCGGUGugGG-GAAGCGGa -3'
miRNA:   3'- cUGCaGGUGCCGUugCCuCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 34493 0.72 0.670541
Target:  5'- gGACGUUCgGCGGgAAUGG-GggGCGGUg -3'
miRNA:   3'- -CUGCAGG-UGCCgUUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 149415 0.74 0.587645
Target:  5'- cGCGUCUcggcgGCGGCGgucgcgcgccgguGCGGAGAGcuGCGGCg -3'
miRNA:   3'- cUGCAGG-----UGCCGU-------------UGCCUCUU--CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 138593 0.79 0.334341
Target:  5'- uGACuUCCGCGGCAGCGGuGggGU-GCa -3'
miRNA:   3'- -CUGcAGGUGCCGUUGCCuCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 122311 0.79 0.341955
Target:  5'- cACGUcCCugGGCGACGGGGAgugAGgGGCu -3'
miRNA:   3'- cUGCA-GGugCCGUUGCCUCU---UCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 93577 0.79 0.341955
Target:  5'- cGCGccCCAUGGCAGCGGAuGAGGCGcGCg -3'
miRNA:   3'- cUGCa-GGUGCCGUUGCCU-CUUCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 124295 0.76 0.479898
Target:  5'- aGGCGagUCGCGGCcgGACGGcGggGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG--UUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 120231 0.75 0.499033
Target:  5'- gGGCGUCCGCGGCcauggcuGCGGGGuuGCAc- -3'
miRNA:   3'- -CUGCAGGUGCCGu------UGCCUCuuCGUcg -5'
24349 5' -54.9 NC_005264.1 + 60613 0.75 0.537268
Target:  5'- uAUG-CCGCGGCAGcCGGcucgcgcAGGAGCAGCa -3'
miRNA:   3'- cUGCaGGUGCCGUU-GCC-------UCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 128908 0.74 0.578493
Target:  5'- cGGCGcgCCACGGCcuucccagcccuGGCGGcAGAaaGGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG------------UUGCC-UCU--UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 149642 0.74 0.578493
Target:  5'- cGACGgCgGCGGCGACGGAuccgcgcGCAGCg -3'
miRNA:   3'- -CUGCaGgUGCCGUUGCCUcuu----CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.