Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 5' | -54.9 | NC_005264.1 | + | 95340 | 0.66 | 0.943007 |
Target: 5'- gGGCG-CCGCGaaacggacuCGGCGGGGcGGCGGCc -3' miRNA: 3'- -CUGCaGGUGCc--------GUUGCCUCuUCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 98922 | 0.66 | 0.94255 |
Target: 5'- aGAUGUCUuccacgcggcacgGCGGCAACuuucaguuGGAGcucGCAGCc -3' miRNA: 3'- -CUGCAGG-------------UGCCGUUG--------CCUCuu-CGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 155232 | 0.66 | 0.938336 |
Target: 5'- cGAUG-CUGCGGCGGgGGAuGAGGaAGCa -3' miRNA: 3'- -CUGCaGGUGCCGUUgCCU-CUUCgUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 127318 | 0.66 | 0.938336 |
Target: 5'- aGGCGcCCgugGGCGACGGGGGcaccugcgccGCGGCg -3' miRNA: 3'- -CUGCaGGug-CCGUUGCCUCUu---------CGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 96888 | 0.66 | 0.938336 |
Target: 5'- aGAUGg-CAUGGCGGCGcgcGAGGGcGCGGCa -3' miRNA: 3'- -CUGCagGUGCCGUUGC---CUCUU-CGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 152342 | 0.66 | 0.938336 |
Target: 5'- cGACGcUCA-GGCAAuCGGGGAGGaaCAGCu -3' miRNA: 3'- -CUGCaGGUgCCGUU-GCCUCUUC--GUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 142969 | 0.66 | 0.938336 |
Target: 5'- cGCGgCCGCGGCGGucucuCGGGcauGAGGCGGg -3' miRNA: 3'- cUGCaGGUGCCGUU-----GCCU---CUUCGUCg -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 8291 | 0.66 | 0.938336 |
Target: 5'- aGGCGcCCgugGGCGACGGGGGcaccugcgccGCGGCg -3' miRNA: 3'- -CUGCaGGug-CCGUUGCCUCUu---------CGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 24155 | 0.66 | 0.938336 |
Target: 5'- -cCGUCgGCcuGGUAGCuGuGAAGCGGCa -3' miRNA: 3'- cuGCAGgUG--CCGUUGcCuCUUCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 118174 | 0.66 | 0.937856 |
Target: 5'- ----aCUGCGGCcACGGGGGaaccaacGGCAGCu -3' miRNA: 3'- cugcaGGUGCCGuUGCCUCU-------UCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 82055 | 0.66 | 0.936889 |
Target: 5'- cGAUGgCUACGGcCAggccagaucucugcGCGGAGggGUcgAGCg -3' miRNA: 3'- -CUGCaGGUGCC-GU--------------UGCCUCuuCG--UCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 7945 | 0.66 | 0.933427 |
Target: 5'- -uCGUCCACGGCcGCGGcgucuuuGucGCuGCc -3' miRNA: 3'- cuGCAGGUGCCGuUGCCu------CuuCGuCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 98320 | 0.66 | 0.933427 |
Target: 5'- ---cUCCGCGGCGgcGCGGAcaGAA-CAGCg -3' miRNA: 3'- cugcAGGUGCCGU--UGCCU--CUUcGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 83119 | 0.66 | 0.933427 |
Target: 5'- cGACGggcgCCAaGGCcGCGGAGgcGCGucuGCc -3' miRNA: 3'- -CUGCa---GGUgCCGuUGCCUCuuCGU---CG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 116981 | 0.66 | 0.933427 |
Target: 5'- aGACuaCUAUGGCGGCGGAGugucguuGguGCa -3' miRNA: 3'- -CUGcaGGUGCCGUUGCCUCuu-----CguCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 47915 | 0.66 | 0.933427 |
Target: 5'- cACGUgugcCCGCGGagccuuauCGACGGAGAA-CGGCu -3' miRNA: 3'- cUGCA----GGUGCC--------GUUGCCUCUUcGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 27823 | 0.66 | 0.933427 |
Target: 5'- -cUGUCUGC--CGACGGAGggGCAGa -3' miRNA: 3'- cuGCAGGUGccGUUGCCUCuuCGUCg -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 56237 | 0.66 | 0.933427 |
Target: 5'- aGCGUCgCGCGGCuuuUGucGAGGUGGCg -3' miRNA: 3'- cUGCAG-GUGCCGuu-GCcuCUUCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 65391 | 0.66 | 0.931908 |
Target: 5'- cGGCGcuacgucuaucagaUCCGCGGCGGCGccc--GCAGCg -3' miRNA: 3'- -CUGC--------------AGGUGCCGUUGCcucuuCGUCG- -5' |
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24349 | 5' | -54.9 | NC_005264.1 | + | 157282 | 0.66 | 0.931908 |
Target: 5'- -cUGUCCGCGGUGcuguCGGuGAcgucagucccggacGGCGGCg -3' miRNA: 3'- cuGCAGGUGCCGUu---GCCuCU--------------UCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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