miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 161301 0.66 0.572396
Target:  5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3'
miRNA:   3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 160176 0.66 0.562867
Target:  5'- gACCCGACuaggacgucaGAGCUGCCGCuGCa-- -3'
miRNA:   3'- gUGGGCUGug--------CUCGGCGGCGcCGgag -5'
24350 3' -63.8 NC_005264.1 + 159832 0.68 0.452331
Target:  5'- gACCCcagaGC-CGAGCCGCCGgcccaguCGGCgCUCg -3'
miRNA:   3'- gUGGGc---UGuGCUCGGCGGC-------GCCG-GAG- -5'
24350 3' -63.8 NC_005264.1 + 159566 0.66 0.581962
Target:  5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3'
miRNA:   3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 159174 0.67 0.533625
Target:  5'- --gCCGAgACG-GCCGCCcaucgucgagacgGCGGCCaUCg -3'
miRNA:   3'- gugGGCUgUGCuCGGCGG-------------CGCCGG-AG- -5'
24350 3' -63.8 NC_005264.1 + 158862 0.66 0.601185
Target:  5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3'
miRNA:   3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 158215 0.73 0.223978
Target:  5'- gGCCCGGCGauuuuCGAgaacgcgccuacGCCGCCGCGGCgCUg -3'
miRNA:   3'- gUGGGCUGU-----GCU------------CGGCGGCGCCG-GAg -5'
24350 3' -63.8 NC_005264.1 + 157545 0.69 0.394814
Target:  5'- uCGCCCGcccCACGggucAGCCGCCGCcccgccguccGGCCg- -3'
miRNA:   3'- -GUGGGCu--GUGC----UCGGCGGCG----------CCGGag -5'
24350 3' -63.8 NC_005264.1 + 157307 0.76 0.139207
Target:  5'- aACCCGcuccGCGCGAGaCGCCGCGGCUg- -3'
miRNA:   3'- gUGGGC----UGUGCUCgGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 156678 0.66 0.576218
Target:  5'- uGCCCcACACGuGCaCGCgaugcgcgacgggcgCGCGGcCCUCg -3'
miRNA:   3'- gUGGGcUGUGCuCG-GCG---------------GCGCC-GGAG- -5'
24350 3' -63.8 NC_005264.1 + 156153 0.66 0.581962
Target:  5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3'
miRNA:   3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 156004 0.69 0.394814
Target:  5'- gCGCgCUGGCGCcauAGUCGCCGCcGCCUCc -3'
miRNA:   3'- -GUG-GGCUGUGc--UCGGCGGCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 155830 0.73 0.234526
Target:  5'- gUACUgGAgAgGAGCCGCCGCgGGCCa- -3'
miRNA:   3'- -GUGGgCUgUgCUCGGCGGCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 155424 0.7 0.369028
Target:  5'- cCACCCGGCgcacgaaccaauggACGAcGgCGCCGgGGCCg- -3'
miRNA:   3'- -GUGGGCUG--------------UGCU-CgGCGGCgCCGGag -5'
24350 3' -63.8 NC_005264.1 + 154595 0.71 0.293621
Target:  5'- aCGCCagcgaagaGGgGgGAGCUGCUGCGGCUUCg -3'
miRNA:   3'- -GUGGg-------CUgUgCUCGGCGGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 152988 0.67 0.515971
Target:  5'- gCGCCCGAUAgGGGCCGCUugacCCUCu -3'
miRNA:   3'- -GUGGGCUGUgCUCGGCGGcgccGGAG- -5'
24350 3' -63.8 NC_005264.1 + 152764 0.75 0.181398
Target:  5'- -cCCCGGCGgGAGauuCCGCCGCGGCUg- -3'
miRNA:   3'- guGGGCUGUgCUC---GGCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 151340 0.67 0.543945
Target:  5'- gCACaUgGGCAaGGGCCG-CGCGGCCUUc -3'
miRNA:   3'- -GUG-GgCUGUgCUCGGCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 146403 0.66 0.591561
Target:  5'- aCACCCGcGgGCaGGCC-CCGCGGCagUCg -3'
miRNA:   3'- -GUGGGC-UgUGcUCGGcGGCGCCGg-AG- -5'
24350 3' -63.8 NC_005264.1 + 145838 0.66 0.595408
Target:  5'- aGCaaGACagGCGAGCUGCgCguuauugggccaaugGCGGCCUCu -3'
miRNA:   3'- gUGggCUG--UGCUCGGCG-G---------------CGCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.