Results 21 - 40 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 159566 | 0.66 | 0.581962 |
Target: 5'- uCGCCCaGGgACGuGgCGCUGCGGCUc- -3' miRNA: 3'- -GUGGG-CUgUGCuCgGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 46398 | 0.66 | 0.601185 |
Target: 5'- -cCCCGAU-CGucGCCcCCGCGGCCa- -3' miRNA: 3'- guGGGCUGuGCu-CGGcGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 102547 | 0.66 | 0.601185 |
Target: 5'- gCGCCCGAaucCGAGuacgucaugcCCGaCGCGGCgCUCa -3' miRNA: 3'- -GUGGGCUgu-GCUC----------GGCgGCGCCG-GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 98417 | 0.66 | 0.590599 |
Target: 5'- uCGCCUGGCGCuuacggacuaucuGAGCCaGUCGUGGagCUCg -3' miRNA: 3'- -GUGGGCUGUG-------------CUCGG-CGGCGCCg-GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 161301 | 0.66 | 0.572396 |
Target: 5'- aUugCCGGCGCGGucaaCGCCGCggGGCCcCa -3' miRNA: 3'- -GugGGCUGUGCUcg--GCGGCG--CCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 122887 | 0.66 | 0.591561 |
Target: 5'- gACUCGcaGC-CGAGgUCGCCGUGGCCcCa -3' miRNA: 3'- gUGGGC--UGuGCUC-GGCGGCGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 133983 | 0.66 | 0.591561 |
Target: 5'- aGCCCG-CGCGGGCCGUuuacgauuucuuCGuuGCCUg -3' miRNA: 3'- gUGGGCuGUGCUCGGCG------------GCgcCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 156678 | 0.66 | 0.576218 |
Target: 5'- uGCCCcACACGuGCaCGCgaugcgcgacgggcgCGCGGcCCUCg -3' miRNA: 3'- gUGGGcUGUGCuCG-GCG---------------GCGCC-GGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 156153 | 0.66 | 0.581962 |
Target: 5'- ---gCGAgGCG-GCCGUCuCGGCCUCg -3' miRNA: 3'- guggGCUgUGCuCGGCGGcGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 128724 | 0.66 | 0.590599 |
Target: 5'- gCGCCuCGACGCuguuucggccgcuGAGCCauugugcccGCCGCGGCa-- -3' miRNA: 3'- -GUGG-GCUGUG-------------CUCGG---------CGGCGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 158862 | 0.66 | 0.601185 |
Target: 5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3' miRNA: 3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 146403 | 0.66 | 0.591561 |
Target: 5'- aCACCCGcGgGCaGGCC-CCGCGGCagUCg -3' miRNA: 3'- -GUGGGC-UgUGcUCGGcGGCGCCGg-AG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 24229 | 0.66 | 0.599258 |
Target: 5'- cCACCUGACgAUGAcuugcaccccaccGCUGCCGCGGaagucaaCCUUa -3' miRNA: 3'- -GUGGGCUG-UGCU-------------CGGCGGCGCC-------GGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 139964 | 0.66 | 0.595408 |
Target: 5'- uGCCCGAacCAgGGGUcuauuucgauagguuCG-CGCGGCCUCg -3' miRNA: 3'- gUGGGCU--GUgCUCG---------------GCgGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 97513 | 0.66 | 0.601185 |
Target: 5'- --aUUGcCAgGAGCUGCCGCGGCUg- -3' miRNA: 3'- gugGGCuGUgCUCGGCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 145838 | 0.66 | 0.595408 |
Target: 5'- aGCaaGACagGCGAGCUGCgCguuauugggccaaugGCGGCCUCu -3' miRNA: 3'- gUGggCUG--UGCUCGGCG-G---------------CGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 9697 | 0.66 | 0.598295 |
Target: 5'- gCGCCuCGACGCuguuucgcgccgcuGAGCCauugugcccGCCGCGGCa-- -3' miRNA: 3'- -GUGG-GCUGUG--------------CUCGG---------CGGCGCCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 39836 | 0.66 | 0.601185 |
Target: 5'- cCGCCCuGCuugGCGguaaagccGGCCGgCGCGGCCa- -3' miRNA: 3'- -GUGGGcUG---UGC--------UCGGCgGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 144290 | 0.66 | 0.581962 |
Target: 5'- cCGCuCCGAC-UGAcGCCGgCGCGcCCUCa -3' miRNA: 3'- -GUG-GGCUGuGCU-CGGCgGCGCcGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 68252 | 0.66 | 0.571441 |
Target: 5'- uGCCCGcgcCGCGGGCgGCCugcugcuGCcGCCUCu -3' miRNA: 3'- gUGGGCu--GUGCUCGgCGG-------CGcCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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