miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 3' -63.8 NC_005264.1 + 68252 0.66 0.571441
Target:  5'- uGCCCGcgcCGCGGGCgGCCugcugcuGCcGCCUCu -3'
miRNA:   3'- gUGGGCu--GUGCUCGgCGG-------CGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 92156 0.66 0.566674
Target:  5'- uCGCCCGcGgGCGuaaaaauugccugccGGCggCGCCGCGGCCa- -3'
miRNA:   3'- -GUGGGC-UgUGC---------------UCG--GCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 160176 0.66 0.562867
Target:  5'- gACCCGACuaggacgucaGAGCUGCCGCuGCa-- -3'
miRNA:   3'- gUGGGCUGug--------CUCGGCGGCGcCGgag -5'
24350 3' -63.8 NC_005264.1 + 116555 0.66 0.562867
Target:  5'- aCGCCgGA--UGAGCgaGCUGCGGCgCUCa -3'
miRNA:   3'- -GUGGgCUguGCUCGg-CGGCGCCG-GAG- -5'
24350 3' -63.8 NC_005264.1 + 57988 0.66 0.562867
Target:  5'- -cCCCG-CGCG-GCgGCCGUGGCUc- -3'
miRNA:   3'- guGGGCuGUGCuCGgCGGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 97667 0.66 0.562867
Target:  5'- gGCCgCGGcCAUGGccagagagggcGCCGCCGCGGUgUUg -3'
miRNA:   3'- gUGG-GCU-GUGCU-----------CGGCGGCGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 136675 0.66 0.562867
Target:  5'- --gCCGACA-GuGCCgcgaaaguccucGCCGCGGCCUg -3'
miRNA:   3'- gugGGCUGUgCuCGG------------CGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 20045 0.66 0.562867
Target:  5'- gGCCUGGCAUGucGCCa-CGCGGCCcCg -3'
miRNA:   3'- gUGGGCUGUGCu-CGGcgGCGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 72173 0.66 0.553382
Target:  5'- gACUCGAuCAU-AGCCGCCagcaauGCGGUCUCc -3'
miRNA:   3'- gUGGGCU-GUGcUCGGCGG------CGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 10981 0.66 0.553382
Target:  5'- aCGCCCccCACGugucGCCGCCggagcgGCGGCCcCa -3'
miRNA:   3'- -GUGGGcuGUGCu---CGGCGG------CGCCGGaG- -5'
24350 3' -63.8 NC_005264.1 + 68422 0.66 0.553382
Target:  5'- uGCUCGcuCugGAcuaccGgCGCCGCGGCCUg -3'
miRNA:   3'- gUGGGCu-GugCU-----CgGCGGCGCCGGAg -5'
24350 3' -63.8 NC_005264.1 + 67519 0.66 0.553382
Target:  5'- gCGCCCGGCgGCGGcaaucuccaugcGCUGCCguaugGCGGCgUCu -3'
miRNA:   3'- -GUGGGCUG-UGCU------------CGGCGG-----CGCCGgAG- -5'
24350 3' -63.8 NC_005264.1 + 22141 0.66 0.553382
Target:  5'- aGCgCGACGCGcGCCuuagauugcGCCGCgGGCCg- -3'
miRNA:   3'- gUGgGCUGUGCuCGG---------CGGCG-CCGGag -5'
24350 3' -63.8 NC_005264.1 + 102840 0.67 0.543945
Target:  5'- gGCCgCGGcCACGcGGCCGUcucgcuCGCGGCCa- -3'
miRNA:   3'- gUGG-GCU-GUGC-UCGGCG------GCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 151340 0.67 0.543945
Target:  5'- gCACaUgGGCAaGGGCCG-CGCGGCCUUc -3'
miRNA:   3'- -GUG-GgCUGUgCUCGGCgGCGCCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 66190 0.67 0.543004
Target:  5'- cCGCCCGcAUcgGCGGGCgGugcgccuCCGCGGCCa- -3'
miRNA:   3'- -GUGGGC-UG--UGCUCGgC-------GGCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 138671 0.67 0.534561
Target:  5'- --aCCGAcCGCG-GCCGCaGCaGCCUCg -3'
miRNA:   3'- gugGGCU-GUGCuCGGCGgCGcCGGAG- -5'
24350 3' -63.8 NC_005264.1 + 127825 0.67 0.534561
Target:  5'- -uCCCGACAgCGuugccuCCGCgGCGGCCg- -3'
miRNA:   3'- guGGGCUGU-GCuc----GGCGgCGCCGGag -5'
24350 3' -63.8 NC_005264.1 + 17676 0.67 0.534561
Target:  5'- aGCCUcaGGCGC-AGCCgagGCCGCGGCggCUCg -3'
miRNA:   3'- gUGGG--CUGUGcUCGG---CGGCGCCG--GAG- -5'
24350 3' -63.8 NC_005264.1 + 15139 0.67 0.534561
Target:  5'- --aCCGACACGGGCaaucgCGuuGCGGCg-- -3'
miRNA:   3'- gugGGCUGUGCUCG-----GCggCGCCGgag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.