Results 41 - 60 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 3' | -63.8 | NC_005264.1 | + | 68252 | 0.66 | 0.571441 |
Target: 5'- uGCCCGcgcCGCGGGCgGCCugcugcuGCcGCCUCu -3' miRNA: 3'- gUGGGCu--GUGCUCGgCGG-------CGcCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 92156 | 0.66 | 0.566674 |
Target: 5'- uCGCCCGcGgGCGuaaaaauugccugccGGCggCGCCGCGGCCa- -3' miRNA: 3'- -GUGGGC-UgUGC---------------UCG--GCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 160176 | 0.66 | 0.562867 |
Target: 5'- gACCCGACuaggacgucaGAGCUGCCGCuGCa-- -3' miRNA: 3'- gUGGGCUGug--------CUCGGCGGCGcCGgag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 116555 | 0.66 | 0.562867 |
Target: 5'- aCGCCgGA--UGAGCgaGCUGCGGCgCUCa -3' miRNA: 3'- -GUGGgCUguGCUCGg-CGGCGCCG-GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 57988 | 0.66 | 0.562867 |
Target: 5'- -cCCCG-CGCG-GCgGCCGUGGCUc- -3' miRNA: 3'- guGGGCuGUGCuCGgCGGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 97667 | 0.66 | 0.562867 |
Target: 5'- gGCCgCGGcCAUGGccagagagggcGCCGCCGCGGUgUUg -3' miRNA: 3'- gUGG-GCU-GUGCU-----------CGGCGGCGCCGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 136675 | 0.66 | 0.562867 |
Target: 5'- --gCCGACA-GuGCCgcgaaaguccucGCCGCGGCCUg -3' miRNA: 3'- gugGGCUGUgCuCGG------------CGGCGCCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 20045 | 0.66 | 0.562867 |
Target: 5'- gGCCUGGCAUGucGCCa-CGCGGCCcCg -3' miRNA: 3'- gUGGGCUGUGCu-CGGcgGCGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 72173 | 0.66 | 0.553382 |
Target: 5'- gACUCGAuCAU-AGCCGCCagcaauGCGGUCUCc -3' miRNA: 3'- gUGGGCU-GUGcUCGGCGG------CGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 10981 | 0.66 | 0.553382 |
Target: 5'- aCGCCCccCACGugucGCCGCCggagcgGCGGCCcCa -3' miRNA: 3'- -GUGGGcuGUGCu---CGGCGG------CGCCGGaG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 68422 | 0.66 | 0.553382 |
Target: 5'- uGCUCGcuCugGAcuaccGgCGCCGCGGCCUg -3' miRNA: 3'- gUGGGCu-GugCU-----CgGCGGCGCCGGAg -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 67519 | 0.66 | 0.553382 |
Target: 5'- gCGCCCGGCgGCGGcaaucuccaugcGCUGCCguaugGCGGCgUCu -3' miRNA: 3'- -GUGGGCUG-UGCU------------CGGCGG-----CGCCGgAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 22141 | 0.66 | 0.553382 |
Target: 5'- aGCgCGACGCGcGCCuuagauugcGCCGCgGGCCg- -3' miRNA: 3'- gUGgGCUGUGCuCGG---------CGGCG-CCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 102840 | 0.67 | 0.543945 |
Target: 5'- gGCCgCGGcCACGcGGCCGUcucgcuCGCGGCCa- -3' miRNA: 3'- gUGG-GCU-GUGC-UCGGCG------GCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 151340 | 0.67 | 0.543945 |
Target: 5'- gCACaUgGGCAaGGGCCG-CGCGGCCUUc -3' miRNA: 3'- -GUG-GgCUGUgCUCGGCgGCGCCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 66190 | 0.67 | 0.543004 |
Target: 5'- cCGCCCGcAUcgGCGGGCgGugcgccuCCGCGGCCa- -3' miRNA: 3'- -GUGGGC-UG--UGCUCGgC-------GGCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 138671 | 0.67 | 0.534561 |
Target: 5'- --aCCGAcCGCG-GCCGCaGCaGCCUCg -3' miRNA: 3'- gugGGCU-GUGCuCGGCGgCGcCGGAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 127825 | 0.67 | 0.534561 |
Target: 5'- -uCCCGACAgCGuugccuCCGCgGCGGCCg- -3' miRNA: 3'- guGGGCUGU-GCuc----GGCGgCGCCGGag -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 17676 | 0.67 | 0.534561 |
Target: 5'- aGCCUcaGGCGC-AGCCgagGCCGCGGCggCUCg -3' miRNA: 3'- gUGGG--CUGUGcUCGG---CGGCGCCG--GAG- -5' |
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24350 | 3' | -63.8 | NC_005264.1 | + | 15139 | 0.67 | 0.534561 |
Target: 5'- --aCCGACACGGGCaaucgCGuuGCGGCg-- -3' miRNA: 3'- gugGGCUGUGCUCG-----GCggCGCCGgag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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