miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24350 5' -47.2 NC_005264.1 + 2868 0.79 0.787832
Target:  5'- gCUGcGGCUGCGAUcgACcgg-GGCGCg -3'
miRNA:   3'- -GACuCCGAUGCUAuaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 3618 0.67 0.999402
Target:  5'- -gGGGGCcGCGAgg-GCg---GGCGCg -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 4473 0.7 0.995309
Target:  5'- -cGAGGCUaaGCGGaaaccguCAAggGGCGCg -3'
miRNA:   3'- gaCUCCGA--UGCUauau---GUUaaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 6830 0.66 0.999891
Target:  5'- -gGAGGCgGCGGcg-ACua-UGGCGCc -3'
miRNA:   3'- gaCUCCGaUGCUauaUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 11496 0.68 0.998877
Target:  5'- -cGaAGGCcGCGcggcccuugcccAUGUGCAGUuuuUGGCGCa -3'
miRNA:   3'- gaC-UCCGaUGC------------UAUAUGUUA---ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 16484 0.68 0.999257
Target:  5'- -gGGGGCgACGAgucacAUGCGucAUUcGGCGCg -3'
miRNA:   3'- gaCUCCGaUGCUa----UAUGU--UAA-CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 18120 0.71 0.990204
Target:  5'- -aGAGGCUAagaGAcGUGCuugcuGUcUGGCGCg -3'
miRNA:   3'- gaCUCCGAUg--CUaUAUGu----UA-ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 22751 0.73 0.964644
Target:  5'- gCUG-GGCgaaGCGAUAgcggcggGCAAUgaggGGCGCg -3'
miRNA:   3'- -GACuCCGa--UGCUAUa------UGUUAa---CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 24169 0.68 0.999084
Target:  5'- -cGAGGCUgcuGCGGcc-GCGGUcgguaaagucUGGCGCg -3'
miRNA:   3'- gaCUCCGA---UGCUauaUGUUA----------ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 24483 0.66 0.999858
Target:  5'- gUGAcGUUGCGAUAgucGCGuucgGGCGCc -3'
miRNA:   3'- gACUcCGAUGCUAUa--UGUuaa-CCGCG- -5'
24350 5' -47.2 NC_005264.1 + 25192 0.68 0.998342
Target:  5'- uCUGAgGGCcGCG---UACGuGUUGGCGCa -3'
miRNA:   3'- -GACU-CCGaUGCuauAUGU-UAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 36669 0.76 0.897343
Target:  5'- cCUGcGGCUGCGccAUACuc-UGGCGCa -3'
miRNA:   3'- -GACuCCGAUGCuaUAUGuuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 37953 0.66 0.99977
Target:  5'- aUGGGGggGCGGUuagccaguugcgcgGCAcgUGGCGUu -3'
miRNA:   3'- gACUCCgaUGCUAua------------UGUuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 40694 0.66 0.999917
Target:  5'- -cGAcGGCUACGAc-UACGAagGGgGCc -3'
miRNA:   3'- gaCU-CCGAUGCUauAUGUUaaCCgCG- -5'
24350 5' -47.2 NC_005264.1 + 43611 0.66 0.999764
Target:  5'- -gGGGGCUACGAUuu-CGAggcucggaaGCGCg -3'
miRNA:   3'- gaCUCCGAUGCUAuauGUUaac------CGCG- -5'
24350 5' -47.2 NC_005264.1 + 43646 0.74 0.933984
Target:  5'- -cGAGGUcguaGGUGUACGGUcGGCGCg -3'
miRNA:   3'- gaCUCCGaug-CUAUAUGUUAaCCGCG- -5'
24350 5' -47.2 NC_005264.1 + 43799 0.68 0.998278
Target:  5'- -cGGGGCgcaguuucugucGCGAUAUAgcg-UGGCGCg -3'
miRNA:   3'- gaCUCCGa-----------UGCUAUAUguuaACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 45466 0.68 0.998632
Target:  5'- --aGGGCcGCGAUGaAC--UUGGCGCa -3'
miRNA:   3'- gacUCCGaUGCUAUaUGuuAACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 54513 0.73 0.964644
Target:  5'- -gGAGGCgGCGGUAcGCuuauucUGGCGCg -3'
miRNA:   3'- gaCUCCGaUGCUAUaUGuua---ACCGCG- -5'
24350 5' -47.2 NC_005264.1 + 56392 0.72 0.974063
Target:  5'- cCUGAGGCgcgACGAUcgcAUAuCGAgcgcGGCGCc -3'
miRNA:   3'- -GACUCCGa--UGCUA---UAU-GUUaa--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.