Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24350 | 5' | -47.2 | NC_005264.1 | + | 122645 | 0.67 | 0.999402 |
Target: 5'- -gGGGGCcGCGAgg-GCg---GGCGCg -3' miRNA: 3'- gaCUCCGaUGCUauaUGuuaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 162825 | 0.68 | 0.998278 |
Target: 5'- -cGGGGCgcaguuucugucGCGAUAUAgcg-UGGCGCg -3' miRNA: 3'- gaCUCCGa-----------UGCUAUAUguuaACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 45466 | 0.68 | 0.998632 |
Target: 5'- --aGGGCcGCGAUGaAC--UUGGCGCa -3' miRNA: 3'- gacUCCGaUGCUAUaUGuuAACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 11496 | 0.68 | 0.998877 |
Target: 5'- -cGaAGGCcGCGcggcccuugcccAUGUGCAGUuuuUGGCGCa -3' miRNA: 3'- gaC-UCCGaUGC------------UAUAUGUUA---ACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 57481 | 0.68 | 0.998877 |
Target: 5'- cCUGGcGGCggcgGCGAagAUGC---UGGCGCg -3' miRNA: 3'- -GACU-CCGa---UGCUa-UAUGuuaACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 24169 | 0.68 | 0.999084 |
Target: 5'- -cGAGGCUgcuGCGGcc-GCGGUcgguaaagucUGGCGCg -3' miRNA: 3'- gaCUCCGA---UGCUauaUGUUA----------ACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 16484 | 0.68 | 0.999257 |
Target: 5'- -gGGGGCgACGAgucacAUGCGucAUUcGGCGCg -3' miRNA: 3'- gaCUCCGaUGCUa----UAUGU--UAA-CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 134089 | 0.67 | 0.999402 |
Target: 5'- gCUGucAGGCUGgGAgacGUACAAaguuUUcGGCGCa -3' miRNA: 3'- -GAC--UCCGAUgCUa--UAUGUU----AA-CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 95346 | 0.67 | 0.999402 |
Target: 5'- -cGAGGCaAUGGggccgACGGgcGGCGCg -3' miRNA: 3'- gaCUCCGaUGCUaua--UGUUaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 142855 | 0.69 | 0.997606 |
Target: 5'- aUGAGGC-ACGuccuUGCGAgcgaaGGCGCu -3' miRNA: 3'- gACUCCGaUGCuau-AUGUUaa---CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 4473 | 0.7 | 0.995309 |
Target: 5'- -cGAGGCUaaGCGGaaaccguCAAggGGCGCg -3' miRNA: 3'- gaCUCCGA--UGCUauau---GUUaaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 79211 | 0.7 | 0.991473 |
Target: 5'- cCUGGGGCUAgGcugcGUGCAGgcGGCGg -3' miRNA: 3'- -GACUCCGAUgCua--UAUGUUaaCCGCg -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 36669 | 0.76 | 0.897343 |
Target: 5'- cCUGcGGCUGCGccAUACuc-UGGCGCa -3' miRNA: 3'- -GACuCCGAUGCuaUAUGuuaACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 22751 | 0.73 | 0.964644 |
Target: 5'- gCUG-GGCgaaGCGAUAgcggcggGCAAUgaggGGCGCg -3' miRNA: 3'- -GACuCCGa--UGCUAUa------UGUUAa---CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 54513 | 0.73 | 0.964644 |
Target: 5'- -gGAGGCgGCGGUAcGCuuauucUGGCGCg -3' miRNA: 3'- gaCUCCGaUGCUAUaUGuua---ACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 56392 | 0.72 | 0.974063 |
Target: 5'- cCUGAGGCgcgACGAUcgcAUAuCGAgcgcGGCGCc -3' miRNA: 3'- -GACUCCGa--UGCUA---UAU-GUUaa--CCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 137075 | 0.72 | 0.974063 |
Target: 5'- --cAGGCgaaGCGGUGc-CAAUUGGCGCa -3' miRNA: 3'- gacUCCGa--UGCUAUauGUUAACCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 162652 | 0.72 | 0.981291 |
Target: 5'- -cGAGGCUcggaagcgcgccgGCGGgucguaggUGUACGGUcGGCGCg -3' miRNA: 3'- gaCUCCGA-------------UGCU--------AUAUGUUAaCCGCG- -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 133281 | 0.71 | 0.988792 |
Target: 5'- -cGGGGCUgGCGAUAaACAAaagGGCGg -3' miRNA: 3'- gaCUCCGA-UGCUAUaUGUUaa-CCGCg -5' |
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24350 | 5' | -47.2 | NC_005264.1 | + | 18120 | 0.71 | 0.990204 |
Target: 5'- -aGAGGCUAagaGAcGUGCuugcuGUcUGGCGCg -3' miRNA: 3'- gaCUCCGAUg--CUaUAUGu----UA-ACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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