miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24351 3' -56.5 NC_005264.1 + 132601 0.68 0.816849
Target:  5'- -cGugGCAccGCUUUgCCGCgcuGGCCGc -3'
miRNA:   3'- gaCugCGUauCGAGA-GGCGau-CCGGC- -5'
24351 3' -56.5 NC_005264.1 + 89377 0.68 0.816849
Target:  5'- cCUGACgGCA-AGCg--CCgGCUAGGCCa -3'
miRNA:   3'- -GACUG-CGUaUCGagaGG-CGAUCCGGc -5'
24351 3' -56.5 NC_005264.1 + 58636 0.69 0.771817
Target:  5'- -cGACGCGU-GCUCUgCgGCgAGGUCGa -3'
miRNA:   3'- gaCUGCGUAuCGAGA-GgCGaUCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 148628 0.69 0.762404
Target:  5'- aUGGCGUu--GUUUUCCGCcguGGCCGa -3'
miRNA:   3'- gACUGCGuauCGAGAGGCGau-CCGGC- -5'
24351 3' -56.5 NC_005264.1 + 155562 0.69 0.752876
Target:  5'- aCUGGCGg--GGCUCUCCGUcgccaAGGCUa -3'
miRNA:   3'- -GACUGCguaUCGAGAGGCGa----UCCGGc -5'
24351 3' -56.5 NC_005264.1 + 127828 0.69 0.723693
Target:  5'- -cGACaGCGUuGC-CUCCGCggcGGCCGg -3'
miRNA:   3'- gaCUG-CGUAuCGaGAGGCGau-CCGGC- -5'
24351 3' -56.5 NC_005264.1 + 67686 0.69 0.723693
Target:  5'- -aGGgGCAgaaUAGCUCUgCGCccGGGCCGu -3'
miRNA:   3'- gaCUgCGU---AUCGAGAgGCGa-UCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 41389 0.7 0.663456
Target:  5'- -gGACGUGUccgcGGC-CUCCGCUuucuuccuaggcAGGCCGg -3'
miRNA:   3'- gaCUGCGUA----UCGaGAGGCGA------------UCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 160416 0.7 0.663456
Target:  5'- -gGACGUGUccgcGGC-CUCCGCUuucuuccuaggcAGGCCGg -3'
miRNA:   3'- gaCUGCGUA----UCGaGAGGCGA------------UCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 110550 0.71 0.643084
Target:  5'- -aGGCGg--AGCUagCCGCUAGGCCGa -3'
miRNA:   3'- gaCUGCguaUCGAgaGGCGAUCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 144256 0.71 0.63288
Target:  5'- -gGugGCcUGGCUCgCUGCcuUGGGCCGg -3'
miRNA:   3'- gaCugCGuAUCGAGaGGCG--AUCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 31676 0.71 0.63288
Target:  5'- -cGAgGCAgGGCUCUCgGCgGGGCUGc -3'
miRNA:   3'- gaCUgCGUaUCGAGAGgCGaUCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 150702 0.71 0.63288
Target:  5'- -cGAgGCAgGGCUCUCgGCgGGGCUGc -3'
miRNA:   3'- gaCUgCGUaUCGAGAGgCGaUCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 145166 0.72 0.571911
Target:  5'- gCUGACgagccgGCGUGaCUCUgaguugCCGCUAGGCCGa -3'
miRNA:   3'- -GACUG------CGUAUcGAGA------GGCGAUCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 80115 0.73 0.493165
Target:  5'- gUGGCGC-UAGCggUCCGCaagGGGCCGc -3'
miRNA:   3'- gACUGCGuAUCGagAGGCGa--UCCGGC- -5'
24351 3' -56.5 NC_005264.1 + 44755 0.74 0.455669
Target:  5'- --aACGUAguuGCUCUCCGCgUAGGCCu -3'
miRNA:   3'- gacUGCGUau-CGAGAGGCG-AUCCGGc -5'
24351 3' -56.5 NC_005264.1 + 16327 0.8 0.226927
Target:  5'- -cGACGCGUAGCUCUggaaCCGCgcGGCCc -3'
miRNA:   3'- gaCUGCGUAUCGAGA----GGCGauCCGGc -5'
24351 3' -56.5 NC_005264.1 + 143913 1.09 0.002433
Target:  5'- gCUGACGCAUAGCUCUCCGCUAGGCCGg -3'
miRNA:   3'- -GACUGCGUAUCGAGAGGCGAUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.