miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24351 5' -58.9 NC_005264.1 + 6005 0.69 0.614816
Target:  5'- gUCGGCCCcgacGGgCGGGGAGGCUCcgGg -3'
miRNA:   3'- uGGUCGGGu---UCgGCCCUUCUGGGuaC- -5'
24351 5' -58.9 NC_005264.1 + 42821 0.69 0.584688
Target:  5'- cGCCGGUCCGcGaggGGGGAGGCCCAc- -3'
miRNA:   3'- -UGGUCGGGUuCgg-CCCUUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 5079 0.69 0.584688
Target:  5'- gGCCAGCCCGu-CCGGGGAGGggUCCu-- -3'
miRNA:   3'- -UGGUCGGGUucGGCCCUUCU--GGGuac -5'
24351 5' -58.9 NC_005264.1 + 124106 0.69 0.584688
Target:  5'- gGCCAGCCCGu-CCGGGGAGGggUCCu-- -3'
miRNA:   3'- -UGGUCGGGUucGGCCCUUCU--GGGuac -5'
24351 5' -58.9 NC_005264.1 + 161847 0.69 0.584688
Target:  5'- cGCCGGUCCGcGaggGGGGAGGCCCAc- -3'
miRNA:   3'- -UGGUCGGGUuCgg-CCCUUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 152950 0.7 0.564757
Target:  5'- uGCC-GCCaGGGCUGGGAAGGCC-GUGg -3'
miRNA:   3'- -UGGuCGGgUUCGGCCCUUCUGGgUAC- -5'
24351 5' -58.9 NC_005264.1 + 73468 0.7 0.554857
Target:  5'- aGCCGGCgCuuGCCGucaGGAAGGCCCGg- -3'
miRNA:   3'- -UGGUCGgGuuCGGC---CCUUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 33916 0.7 0.545009
Target:  5'- cGCCuuucuGCcgCCAGGCUGGGAAGGCC-GUGg -3'
miRNA:   3'- -UGGu----CG--GGUUCGGCCCUUCUGGgUAC- -5'
24351 5' -58.9 NC_005264.1 + 148343 0.71 0.515829
Target:  5'- gACCGuGcCCCGGGCCGGGGAG-CUCuUGg -3'
miRNA:   3'- -UGGU-C-GGGUUCGGCCCUUCuGGGuAC- -5'
24351 5' -58.9 NC_005264.1 + 5056 0.71 0.515829
Target:  5'- cGCC-GCCU-AGCUGGGAAGACgCCgAUGg -3'
miRNA:   3'- -UGGuCGGGuUCGGCCCUUCUG-GG-UAC- -5'
24351 5' -58.9 NC_005264.1 + 63292 0.71 0.515829
Target:  5'- aACCGGCCCcAGUCGGGGgaugcGGACUCc-- -3'
miRNA:   3'- -UGGUCGGGuUCGGCCCU-----UCUGGGuac -5'
24351 5' -58.9 NC_005264.1 + 8258 0.71 0.514866
Target:  5'- gGCCAGCggcgcccugguguCCGccucguugcaGGCCGGGGAGAUCCGc- -3'
miRNA:   3'- -UGGUCG-------------GGU----------UCGGCCCUUCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 127697 0.71 0.50624
Target:  5'- cACCGcGgCCAGGCCgGGGAAGAauCCCGUc -3'
miRNA:   3'- -UGGU-CgGGUUCGG-CCCUUCU--GGGUAc -5'
24351 5' -58.9 NC_005264.1 + 158985 0.71 0.468699
Target:  5'- -gCAGCCCAAuccCCGGcGcAGGACCCAUGc -3'
miRNA:   3'- ugGUCGGGUUc--GGCC-C-UUCUGGGUAC- -5'
24351 5' -58.9 NC_005264.1 + 154354 0.72 0.459536
Target:  5'- cGCCGGCCCAcucuGCUGcuuGggGACCCAg- -3'
miRNA:   3'- -UGGUCGGGUu---CGGCc--CuuCUGGGUac -5'
24351 5' -58.9 NC_005264.1 + 137727 0.72 0.423875
Target:  5'- gGCgAGCCCGcaAGCCuaccaGGGAAGACCUGUu -3'
miRNA:   3'- -UGgUCGGGU--UCGG-----CCCUUCUGGGUAc -5'
24351 5' -58.9 NC_005264.1 + 31519 0.74 0.365655
Target:  5'- uCCAgGCUCGGGCgGGGAGGGCCguUGg -3'
miRNA:   3'- uGGU-CGGGUUCGgCCCUUCUGGguAC- -5'
24351 5' -58.9 NC_005264.1 + 150546 0.74 0.365655
Target:  5'- uCCAgGCUCGGGCgGGGAGGGCCguUGg -3'
miRNA:   3'- uGGU-CGGGUUCGgCCCUUCUGGguAC- -5'
24351 5' -58.9 NC_005264.1 + 143947 0.97 0.010594
Target:  5'- uACCAGCCCAAGCCGGaGAGACCCAUGa -3'
miRNA:   3'- -UGGUCGGGUUCGGCCcUUCUGGGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.