miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24352 3' -59.1 NC_005264.1 + 156685 0.68 0.698016
Target:  5'- cACGUGcacgcgaugcGCGACgggcGCgCGGCCCUcGCccUCCCg -3'
miRNA:   3'- -UGCAU----------CGUUGa---CG-GCCGGGA-CG--AGGG- -5'
24352 3' -59.1 NC_005264.1 + 9749 0.68 0.678196
Target:  5'- gGCGgcaGGCAA--GCC-GCCgUGCUCCCa -3'
miRNA:   3'- -UGCa--UCGUUgaCGGcCGGgACGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 156187 0.68 0.678196
Target:  5'- gGCGUGGCGGC-GCCGGCUauaUGUcggggcgcaggUCCa -3'
miRNA:   3'- -UGCAUCGUUGaCGGCCGGg--ACG-----------AGGg -5'
24352 3' -59.1 NC_005264.1 + 41342 0.68 0.668228
Target:  5'- uCGUcgaAGCAGCcGCgaaGGCCCaGCUCCg -3'
miRNA:   3'- uGCA---UCGUUGaCGg--CCGGGaCGAGGg -5'
24352 3' -59.1 NC_005264.1 + 24147 0.68 0.668228
Target:  5'- -aGUGGCAACcGUCGGCCUgguaGCUgugaagcggcaCCCa -3'
miRNA:   3'- ugCAUCGUUGaCGGCCGGGa---CGA-----------GGG- -5'
24352 3' -59.1 NC_005264.1 + 74236 0.68 0.668228
Target:  5'- cACGUAGC-GC-GCUGGCCgC-GCUCCa -3'
miRNA:   3'- -UGCAUCGuUGaCGGCCGG-GaCGAGGg -5'
24352 3' -59.1 NC_005264.1 + 160369 0.68 0.668228
Target:  5'- uCGUcgaAGCAGCcGCgaaGGCCCaGCUCCg -3'
miRNA:   3'- uGCA---UCGUUGaCGg--CCGGGaCGAGGg -5'
24352 3' -59.1 NC_005264.1 + 30346 0.68 0.668228
Target:  5'- -aGUcAGCAGCUGCCcugcGGCCaCgugGCUgCCg -3'
miRNA:   3'- ugCA-UCGUUGACGG----CCGG-Ga--CGAgGG- -5'
24352 3' -59.1 NC_005264.1 + 75205 0.68 0.648214
Target:  5'- cGCGccccacGCGGCUGCauCGGCCCUGCgcggcggCCg -3'
miRNA:   3'- -UGCau----CGUUGACG--GCCGGGACGa------GGg -5'
24352 3' -59.1 NC_005264.1 + 93189 0.68 0.648214
Target:  5'- gGCGgAGCAGCUGagguaCGGUgCUGCccagCCCc -3'
miRNA:   3'- -UGCaUCGUUGACg----GCCGgGACGa---GGG- -5'
24352 3' -59.1 NC_005264.1 + 74728 0.69 0.638185
Target:  5'- cCGUAcGCAACcgcGCCGGCCgacgCUGUgCCCg -3'
miRNA:   3'- uGCAU-CGUUGa--CGGCCGG----GACGaGGG- -5'
24352 3' -59.1 NC_005264.1 + 39532 0.69 0.628152
Target:  5'- gACGU-GCucuCUGCCGccGCCCcgcgGUUCCCg -3'
miRNA:   3'- -UGCAuCGuu-GACGGC--CGGGa---CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 158559 0.69 0.628152
Target:  5'- gACGU-GCucuCUGCCGccGCCCcgcgGUUCCCg -3'
miRNA:   3'- -UGCAuCGuu-GACGGC--CGGGa---CGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 39820 0.7 0.568258
Target:  5'- gGCGaggaGGCAugUGCC-GCCCUGCUUg- -3'
miRNA:   3'- -UGCa---UCGUugACGGcCGGGACGAGgg -5'
24352 3' -59.1 NC_005264.1 + 158846 0.7 0.568258
Target:  5'- gGCGaggaGGCAugUGCC-GCCCUGCUUg- -3'
miRNA:   3'- -UGCa---UCGUugACGGcCGGGACGAGgg -5'
24352 3' -59.1 NC_005264.1 + 17761 0.7 0.548571
Target:  5'- uCGcGGCAaggagaGCUGcCCGGCCCgGCUUCUa -3'
miRNA:   3'- uGCaUCGU------UGAC-GGCCGGGaCGAGGG- -5'
24352 3' -59.1 NC_005264.1 + 9958 0.7 0.538806
Target:  5'- gGCG-AGgGACUGCCGGaCCCguggGCgaugccgagCCCa -3'
miRNA:   3'- -UGCaUCgUUGACGGCC-GGGa---CGa--------GGG- -5'
24352 3' -59.1 NC_005264.1 + 52723 0.7 0.538806
Target:  5'- aGCGcGGCGGCUcUCGGCCCcugucguucUGCUCCg -3'
miRNA:   3'- -UGCaUCGUUGAcGGCCGGG---------ACGAGGg -5'
24352 3' -59.1 NC_005264.1 + 128984 0.7 0.53686
Target:  5'- gGCG-AGgGACUGCCGGaCCCgUGCggcgaugccgagCCCa -3'
miRNA:   3'- -UGCaUCgUUGACGGCC-GGG-ACGa-----------GGG- -5'
24352 3' -59.1 NC_005264.1 + 142798 0.7 0.529102
Target:  5'- cGCGUGGCGACaUGCCaGGCCaugguagGaCUCCa -3'
miRNA:   3'- -UGCAUCGUUG-ACGG-CCGGga-----C-GAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.