miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24352 5' -55.2 NC_005264.1 + 62554 0.66 0.920304
Target:  5'- cGGuuccaGCAAGCCGAGCCcGCUGcgcgGAUc -3'
miRNA:   3'- aCC-----CGUUCGGCUUGGaCGGCaa--CUAu -5'
24352 5' -55.2 NC_005264.1 + 114892 0.66 0.902082
Target:  5'- cGGGCAcGCUGGACCgggucucGCCGUc---- -3'
miRNA:   3'- aCCCGUuCGGCUUGGa------CGGCAacuau -5'
24352 5' -55.2 NC_005264.1 + 118358 0.67 0.888724
Target:  5'- uUGGGUcucGAcGUCGAuggucacgaacGCCUGCCGcUUGGUAa -3'
miRNA:   3'- -ACCCG---UU-CGGCU-----------UGGACGGC-AACUAU- -5'
24352 5' -55.2 NC_005264.1 + 69401 0.67 0.881693
Target:  5'- aUGGGCGGGUaggCGcGCCUGCCGccgucgGAg- -3'
miRNA:   3'- -ACCCGUUCG---GCuUGGACGGCaa----CUau -5'
24352 5' -55.2 NC_005264.1 + 41874 0.67 0.881693
Target:  5'- gGGGCAacGGCCGcgcacaGACUcuUGCCGgagGAUGg -3'
miRNA:   3'- aCCCGU--UCGGC------UUGG--ACGGCaa-CUAU- -5'
24352 5' -55.2 NC_005264.1 + 160900 0.67 0.881693
Target:  5'- gGGGCAacGGCCGcgcacaGACUcuUGCCGgagGAUGg -3'
miRNA:   3'- aCCCGU--UCGGC------UUGG--ACGGCaa-CUAU- -5'
24352 5' -55.2 NC_005264.1 + 76357 0.67 0.874431
Target:  5'- aGGGCGAGCCuGAACCcacUGCUccUGGc- -3'
miRNA:   3'- aCCCGUUCGG-CUUGG---ACGGcaACUau -5'
24352 5' -55.2 NC_005264.1 + 72908 0.67 0.874431
Target:  5'- aUGGGCGGaaUGAGCgacacguugCUGCCGUUGAg- -3'
miRNA:   3'- -ACCCGUUcgGCUUG---------GACGGCAACUau -5'
24352 5' -55.2 NC_005264.1 + 125208 0.67 0.859242
Target:  5'- gGGGCAcGCCGGucGCCaugGCCGUgcGAg- -3'
miRNA:   3'- aCCCGUuCGGCU--UGGa--CGGCAa-CUau -5'
24352 5' -55.2 NC_005264.1 + 6181 0.67 0.859242
Target:  5'- gGGGCAcGCCGGucGCCaugGCCGUgcGAg- -3'
miRNA:   3'- aCCCGUuCGGCU--UGGa--CGGCAa-CUau -5'
24352 5' -55.2 NC_005264.1 + 114109 0.68 0.851326
Target:  5'- cGGGCcAGUCGGcCCUGCCGc-GAa- -3'
miRNA:   3'- aCCCGuUCGGCUuGGACGGCaaCUau -5'
24352 5' -55.2 NC_005264.1 + 98151 0.68 0.851326
Target:  5'- cGGGCGAGCaCG-GCCUGCCc------ -3'
miRNA:   3'- aCCCGUUCG-GCuUGGACGGcaacuau -5'
24352 5' -55.2 NC_005264.1 + 47199 0.68 0.834884
Target:  5'- cUGGGaUGAGCgGGGCCacgGCCGUcGAUGg -3'
miRNA:   3'- -ACCC-GUUCGgCUUGGa--CGGCAaCUAU- -5'
24352 5' -55.2 NC_005264.1 + 52870 0.68 0.834884
Target:  5'- cGGGCAGGCuCGcgguACCUGCCa------ -3'
miRNA:   3'- aCCCGUUCG-GCu---UGGACGGcaacuau -5'
24352 5' -55.2 NC_005264.1 + 6502 0.68 0.826372
Target:  5'- aGGGCcgguAGCCGGuCUUGCCGUa---- -3'
miRNA:   3'- aCCCGu---UCGGCUuGGACGGCAacuau -5'
24352 5' -55.2 NC_005264.1 + 125529 0.68 0.826372
Target:  5'- aGGGCcgguAGCCGGuCUUGCCGUa---- -3'
miRNA:   3'- aCCCGu---UCGGCUuGGACGGCAacuau -5'
24352 5' -55.2 NC_005264.1 + 52420 0.7 0.746548
Target:  5'- cGGGCGaccuGGCCGAgaaguacuggcucgaGCCUGCCGa----- -3'
miRNA:   3'- aCCCGU----UCGGCU---------------UGGACGGCaacuau -5'
24352 5' -55.2 NC_005264.1 + 72255 0.73 0.547353
Target:  5'- cGGGCAAGgCGcGACCUGCCGcgcuaUGAa- -3'
miRNA:   3'- aCCCGUUCgGC-UUGGACGGCa----ACUau -5'
24352 5' -55.2 NC_005264.1 + 143650 1.07 0.004209
Target:  5'- aUGGGCAAGCCGAACCUGCCGUUGAUAc -3'
miRNA:   3'- -ACCCGUUCGGCUUGGACGGCAACUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.