miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24353 5' -60.5 NC_005264.1 + 149947 0.66 0.761243
Target:  5'- aGGCCGGgCGGcUCgAcGGUCCguccgggUCGUCa -3'
miRNA:   3'- -CCGGCCgGUCcAGgUaCCAGG-------AGCAG- -5'
24353 5' -60.5 NC_005264.1 + 77478 0.66 0.752031
Target:  5'- cGGCUcgGGCUGGGUCCAcucugaauuaggaUGG-CCUgaGUCg -3'
miRNA:   3'- -CCGG--CCGGUCCAGGU-------------ACCaGGAg-CAG- -5'
24353 5' -60.5 NC_005264.1 + 16090 0.66 0.72479
Target:  5'- uGCUGuuGCCGGGUCCGccGcCCUCGUUc -3'
miRNA:   3'- cCGGC--CGGUCCAGGUacCaGGAGCAG- -5'
24353 5' -60.5 NC_005264.1 + 27152 0.67 0.705629
Target:  5'- gGGCCGGCCc-GUCCGUGcaggccGUCUUCa-- -3'
miRNA:   3'- -CCGGCCGGucCAGGUAC------CAGGAGcag -5'
24353 5' -60.5 NC_005264.1 + 130313 0.67 0.705629
Target:  5'- aGCCagGGCCgaggauGGGUCgcauCGUGGUCCUCuacGUCg -3'
miRNA:   3'- cCGG--CCGG------UCCAG----GUACCAGGAG---CAG- -5'
24353 5' -60.5 NC_005264.1 + 75233 0.67 0.705629
Target:  5'- uGGCgCGGCCAGGUC----GUCCgCGUUu -3'
miRNA:   3'- -CCG-GCCGGUCCAGguacCAGGaGCAG- -5'
24353 5' -60.5 NC_005264.1 + 124102 0.67 0.686237
Target:  5'- aGG-CGGCCAGcccGUCCGgggaggGGUCCUCu-- -3'
miRNA:   3'- -CCgGCCGGUC---CAGGUa-----CCAGGAGcag -5'
24353 5' -60.5 NC_005264.1 + 5075 0.67 0.686237
Target:  5'- aGG-CGGCCAGcccGUCCGgggaggGGUCCUCu-- -3'
miRNA:   3'- -CCgGCCGGUC---CAGGUa-----CCAGGAGcag -5'
24353 5' -60.5 NC_005264.1 + 82198 0.68 0.616475
Target:  5'- cGGCCgugucguGGCCGcGcGUCCAUcGUCCUCGg- -3'
miRNA:   3'- -CCGG-------CCGGU-C-CAGGUAcCAGGAGCag -5'
24353 5' -60.5 NC_005264.1 + 79888 0.69 0.587994
Target:  5'- cGCCGGCuCAGG-CC-UGGUCUUUG-Cg -3'
miRNA:   3'- cCGGCCG-GUCCaGGuACCAGGAGCaG- -5'
24353 5' -60.5 NC_005264.1 + 125633 0.69 0.578223
Target:  5'- aGCCGGUCGGGagUCCAUGGagcggcgCCguaaaaugCGUCu -3'
miRNA:   3'- cCGGCCGGUCC--AGGUACCa------GGa-------GCAG- -5'
24353 5' -60.5 NC_005264.1 + 126687 0.69 0.568488
Target:  5'- uGCCGGCUcggAGGgcucggccUCCAUGGg-CUCGUCc -3'
miRNA:   3'- cCGGCCGG---UCC--------AGGUACCagGAGCAG- -5'
24353 5' -60.5 NC_005264.1 + 7660 0.69 0.568488
Target:  5'- uGCCGGCUcggAGGgcucggccUCCAUGGg-CUCGUCc -3'
miRNA:   3'- cCGGCCGG---UCC--------AGGUACCagGAGCAG- -5'
24353 5' -60.5 NC_005264.1 + 93284 0.69 0.558794
Target:  5'- aGGUCGGUCAgauucGGUuucauguucgCCAUGGuUCCUCGUg -3'
miRNA:   3'- -CCGGCCGGU-----CCA----------GGUACC-AGGAGCAg -5'
24353 5' -60.5 NC_005264.1 + 159852 0.71 0.430989
Target:  5'- cGCCGGCC-GGUCCuccucuuccucuUCCUCGUCg -3'
miRNA:   3'- cCGGCCGGuCCAGGuacc--------AGGAGCAG- -5'
24353 5' -60.5 NC_005264.1 + 40826 0.71 0.430989
Target:  5'- cGCCGGCC-GGUCCuccucuuccucuUCCUCGUCg -3'
miRNA:   3'- cCGGCCGGuCCAGGuacc--------AGGAGCAG- -5'
24353 5' -60.5 NC_005264.1 + 144442 0.72 0.396618
Target:  5'- cGCCGGCCGGaaCgGUGGUCgUUGUCc -3'
miRNA:   3'- cCGGCCGGUCcaGgUACCAGgAGCAG- -5'
24353 5' -60.5 NC_005264.1 + 126181 0.73 0.354891
Target:  5'- uGGUcgCGGCCAGGUCCAUccgcgcacgggucgGGuUCCcCGUCg -3'
miRNA:   3'- -CCG--GCCGGUCCAGGUA--------------CC-AGGaGCAG- -5'
24353 5' -60.5 NC_005264.1 + 7154 0.73 0.354891
Target:  5'- uGGUcgCGGCCAGGUCCAUccgcgcacgggucgGGuUCCcCGUCg -3'
miRNA:   3'- -CCG--GCCGGUCCAGGUA--------------CC-AGGaGCAG- -5'
24353 5' -60.5 NC_005264.1 + 141798 1.11 0.00086
Target:  5'- aGGCCGGCCAGGUCCAUGGUCCUCGUCg -3'
miRNA:   3'- -CCGGCCGGUCCAGGUACCAGGAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.