miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24354 3' -58.7 NC_005264.1 + 31873 0.68 0.734293
Target:  5'- cUCGCGGUCGGcGCA-CGCCuUGUcGAu -3'
miRNA:   3'- -AGCGCCAGCCcCGUgGCGGcAUAaCU- -5'
24354 3' -58.7 NC_005264.1 + 24183 0.68 0.734293
Target:  5'- cCGCGGUCGGuaaagucuGGCGCggUGCCGg--UGGc -3'
miRNA:   3'- aGCGCCAGCC--------CCGUG--GCGGCauaACU- -5'
24354 3' -58.7 NC_005264.1 + 5044 0.68 0.734293
Target:  5'- cCGC-GUCGuGGGCGCCGCCu------ -3'
miRNA:   3'- aGCGcCAGC-CCCGUGGCGGcauaacu -5'
24354 3' -58.7 NC_005264.1 + 124170 0.68 0.724747
Target:  5'- aCGUGGUgauGGGCGCCGCCGc----- -3'
miRNA:   3'- aGCGCCAgc-CCCGUGGCGGCauaacu -5'
24354 3' -58.7 NC_005264.1 + 41149 0.68 0.705438
Target:  5'- cUCGCGGUCGGGGCcagaggACU-CUGUAgacGAg -3'
miRNA:   3'- -AGCGCCAGCCCCG------UGGcGGCAUaa-CU- -5'
24354 3' -58.7 NC_005264.1 + 96318 0.68 0.705438
Target:  5'- aCGCGGUCGucgucaGGGCACgcuCGCUGUAc--- -3'
miRNA:   3'- aGCGCCAGC------CCCGUG---GCGGCAUaacu -5'
24354 3' -58.7 NC_005264.1 + 160176 0.68 0.705438
Target:  5'- cUCGCGGUCGGGGCcagaggACU-CUGUAgacGAg -3'
miRNA:   3'- -AGCGCCAGCCCCG------UGGcGGCAUaa-CU- -5'
24354 3' -58.7 NC_005264.1 + 117430 0.68 0.695692
Target:  5'- gUCGCGGcgCGcaGGGCGCCGCCc------ -3'
miRNA:   3'- -AGCGCCa-GC--CCCGUGGCGGcauaacu -5'
24354 3' -58.7 NC_005264.1 + 73466 0.68 0.695692
Target:  5'- gCGCGGaCaGGGCGCCGUU-UGUUGAc -3'
miRNA:   3'- aGCGCCaGcCCCGUGGCGGcAUAACU- -5'
24354 3' -58.7 NC_005264.1 + 70662 0.69 0.685896
Target:  5'- cCGUGGcCGcGGCGCCGCCGg----- -3'
miRNA:   3'- aGCGCCaGCcCCGUGGCGGCauaacu -5'
24354 3' -58.7 NC_005264.1 + 116228 0.69 0.675073
Target:  5'- aCGCGGUcccacgacggugcCGGGaGCuCCGCCGUGa--- -3'
miRNA:   3'- aGCGCCA-------------GCCC-CGuGGCGGCAUaacu -5'
24354 3' -58.7 NC_005264.1 + 154808 0.69 0.646374
Target:  5'- -gGCGGagggcgCGGuGGCGCCGUCGUGgcGGg -3'
miRNA:   3'- agCGCCa-----GCC-CCGUGGCGGCAUaaCU- -5'
24354 3' -58.7 NC_005264.1 + 35782 0.69 0.646374
Target:  5'- -gGCGGagggcgCGGuGGCGCCGUCGUGgcGGg -3'
miRNA:   3'- agCGCCa-----GCC-CCGUGGCGGCAUaaCU- -5'
24354 3' -58.7 NC_005264.1 + 18636 0.69 0.646374
Target:  5'- aCGUGGU-GGGGUGCCGCCcaccGUAUgcuaaUGAg -3'
miRNA:   3'- aGCGCCAgCCCCGUGGCGG----CAUA-----ACU- -5'
24354 3' -58.7 NC_005264.1 + 97669 0.69 0.644389
Target:  5'- cCGCGGccauggccagaGaGGGCGCCGCCGcggUGUUGGu -3'
miRNA:   3'- aGCGCCag---------C-CCCGUGGCGGC---AUAACU- -5'
24354 3' -58.7 NC_005264.1 + 116478 0.7 0.636447
Target:  5'- aUCGCGGuaUCGGGGaUACCGCgGguccUGGa -3'
miRNA:   3'- -AGCGCC--AGCCCC-GUGGCGgCaua-ACU- -5'
24354 3' -58.7 NC_005264.1 + 6260 0.7 0.616592
Target:  5'- gUCGCGGUCGu--CGCCGCCGUcggGAg -3'
miRNA:   3'- -AGCGCCAGCcccGUGGCGGCAuaaCU- -5'
24354 3' -58.7 NC_005264.1 + 125287 0.7 0.616592
Target:  5'- gUCGCGGUCGu--CGCCGCCGUcggGAg -3'
miRNA:   3'- -AGCGCCAGCcccGUGGCGGCAuaaCU- -5'
24354 3' -58.7 NC_005264.1 + 7396 0.7 0.586909
Target:  5'- aUCGCGGcCccGGCGCCGUCGUccAUUGGu -3'
miRNA:   3'- -AGCGCCaGccCCGUGGCGGCA--UAACU- -5'
24354 3' -58.7 NC_005264.1 + 89021 0.76 0.304263
Target:  5'- cUCGCGcauGUCGGGGCACuCGCCuGUGUa-- -3'
miRNA:   3'- -AGCGC---CAGCCCCGUG-GCGG-CAUAacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.