miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 331 0.68 0.988451
Target:  5'- -aUGGAGAGCACCAacaacaaccccuuGCGGgacaUGCCa -3'
miRNA:   3'- gaGCCUCUUGUGGUauu----------UGCCa---GCGG- -5'
24355 3' -50.4 NC_005264.1 + 383 0.72 0.925061
Target:  5'- uUUGGGGGgcaGCGCCGgc-GCGGUCGUg -3'
miRNA:   3'- gAGCCUCU---UGUGGUauuUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 5243 0.74 0.833053
Target:  5'- cCUCGGguacguuuAGAGCGCCGggAGGCGaGUCGCg -3'
miRNA:   3'- -GAGCC--------UCUUGUGGUa-UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 5331 0.68 0.990986
Target:  5'- -aCGGGGAGa--CG-AAGCGGUCGCUc -3'
miRNA:   3'- gaGCCUCUUgugGUaUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 6453 0.66 0.996806
Target:  5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3'
miRNA:   3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 6552 0.68 0.989713
Target:  5'- uUCGGcaGGAGCGCCucguccACGGUgaugCGCCc -3'
miRNA:   3'- gAGCC--UCUUGUGGuauu--UGCCA----GCGG- -5'
24355 3' -50.4 NC_005264.1 + 7079 0.72 0.913514
Target:  5'- --gGGGGAACACCAgGAAUGGUaGCa -3'
miRNA:   3'- gagCCUCUUGUGGUaUUUGCCAgCGg -5'
24355 3' -50.4 NC_005264.1 + 7665 0.69 0.983171
Target:  5'- gCUCGGAGGGCucgGCCuccAugGGcUCGUCc -3'
miRNA:   3'- -GAGCCUCUUG---UGGuauUugCC-AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 8306 0.68 0.989713
Target:  5'- -aCGG-GGGCACCugcgccGCGGcgUCGCCg -3'
miRNA:   3'- gaGCCuCUUGUGGuauu--UGCC--AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 13262 0.75 0.814792
Target:  5'- aCUCGGAGGacgacgaggguucGCGCCAgcgAGGCGgGUCGUg -3'
miRNA:   3'- -GAGCCUCU-------------UGUGGUa--UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 13481 0.68 0.990986
Target:  5'- aCUCGGGGGACAgCUcgGGAgaGGUCGaCUu -3'
miRNA:   3'- -GAGCCUCUUGU-GGuaUUUg-CCAGC-GG- -5'
24355 3' -50.4 NC_005264.1 + 14220 0.66 0.997719
Target:  5'- -gCGGAaaacAACGCCAUGAGCuucGGUC-CCa -3'
miRNA:   3'- gaGCCUc---UUGUGGUAUUUG---CCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 17291 0.75 0.806727
Target:  5'- -gCGGAGGGCugcCCAUcuaacuGAAUGGUCGCUg -3'
miRNA:   3'- gaGCCUCUUGu--GGUA------UUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 18525 0.67 0.995611
Target:  5'- aUCGG-GGGCGCCGUcucccccuGAgGGcgCGCCg -3'
miRNA:   3'- gAGCCuCUUGUGGUAu-------UUgCCa-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 18579 0.68 0.985042
Target:  5'- -aCGGAGAACuCgGUGucgguGCGGUagcaGCCg -3'
miRNA:   3'- gaGCCUCUUGuGgUAUu----UGCCAg---CGG- -5'
24355 3' -50.4 NC_005264.1 + 20477 0.68 0.990618
Target:  5'- aUgGGAGGGCauggaaucccuuuuGCCu---GCGGUCGCUg -3'
miRNA:   3'- gAgCCUCUUG--------------UGGuauuUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 21661 0.74 0.849664
Target:  5'- cCUCGGGGGuaaccGCAUCGgAAAUugaGGUCGCCg -3'
miRNA:   3'- -GAGCCUCU-----UGUGGUaUUUG---CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 22039 0.71 0.94516
Target:  5'- uUCGGcuucAGAccgACGCCuUGGACGGUagCGCCg -3'
miRNA:   3'- gAGCC----UCU---UGUGGuAUUUGCCA--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 22221 0.7 0.96414
Target:  5'- -gUGGAGucguCGCCucgucggcggucUGGGCGGUCGCCu -3'
miRNA:   3'- gaGCCUCuu--GUGGu-----------AUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 24618 0.73 0.900977
Target:  5'- -cCGGGGGACAgCAgcgacuGCGGUUGUCg -3'
miRNA:   3'- gaGCCUCUUGUgGUauu---UGCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.