miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 77731 0.7 0.96774
Target:  5'- -cCGGAGGACugCGcagaagcUGAcuACGG-CGCCg -3'
miRNA:   3'- gaGCCUCUUGugGU-------AUU--UGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 7079 0.72 0.913514
Target:  5'- --gGGGGAACACCAgGAAUGGUaGCa -3'
miRNA:   3'- gagCCUCUUGUGGUaUUUGCCAgCGg -5'
24355 3' -50.4 NC_005264.1 + 383 0.72 0.925061
Target:  5'- uUUGGGGGgcaGCGCCGgc-GCGGUCGUg -3'
miRNA:   3'- gAGCCUCU---UGUGGUauuUGCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 95448 0.72 0.925061
Target:  5'- -cCGGAGAugcggcGCAUCGUAGACGa-CGCCg -3'
miRNA:   3'- gaGCCUCU------UGUGGUAUUUGCcaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 142459 0.72 0.93046
Target:  5'- -gCGGGGGgaauuACugCGUuuGCGGUgGCCg -3'
miRNA:   3'- gaGCCUCU-----UGugGUAuuUGCCAgCGG- -5'
24355 3' -50.4 NC_005264.1 + 156458 0.72 0.93046
Target:  5'- -gUGGAGcAGCACgAgcGGCuGGUCGCCg -3'
miRNA:   3'- gaGCCUC-UUGUGgUauUUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 51020 0.71 0.935608
Target:  5'- -gCGGAGAACACUA-AGACGuuaaCGCCg -3'
miRNA:   3'- gaGCCUCUUGUGGUaUUUGCca--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 22039 0.71 0.94516
Target:  5'- uUCGGcuucAGAccgACGCCuUGGACGGUagCGCCg -3'
miRNA:   3'- gAGCC----UCU---UGUGGuAUUUGCCA--GCGG- -5'
24355 3' -50.4 NC_005264.1 + 162805 0.7 0.957659
Target:  5'- -aCGGAGAcuCGCCGUGGguGCGGggCGCa -3'
miRNA:   3'- gaGCCUCUu-GUGGUAUU--UGCCa-GCGg -5'
24355 3' -50.4 NC_005264.1 + 24691 0.72 0.907368
Target:  5'- cCUCGGA-AACGCCGaAGAUGGUCGgUa -3'
miRNA:   3'- -GAGCCUcUUGUGGUaUUUGCCAGCgG- -5'
24355 3' -50.4 NC_005264.1 + 24618 0.73 0.900977
Target:  5'- -cCGGGGGACAgCAgcgacuGCGGUUGUCg -3'
miRNA:   3'- gaGCCUCUUGUgGUauu---UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 154809 0.73 0.887467
Target:  5'- -gCGGAGGGCGCgGUGgcgccgucguGGCGGgCGCCu -3'
miRNA:   3'- gaGCCUCUUGUGgUAU----------UUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 86298 0.77 0.686004
Target:  5'- aUCGGGGGucuaauuuugccagAUACCgccgaagcggcgGUAGACGGUCGCCu -3'
miRNA:   3'- gAGCCUCU--------------UGUGG------------UAUUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 58471 0.76 0.769354
Target:  5'- uCUCGucuGGGAACGCCu--GACGGUCgGCCc -3'
miRNA:   3'- -GAGC---CUCUUGUGGuauUUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 145035 0.75 0.778913
Target:  5'- gUCGGAGGACGCaa-GAACGucacgaauGUCGCCa -3'
miRNA:   3'- gAGCCUCUUGUGguaUUUGC--------CAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 141234 0.75 0.796688
Target:  5'- aUUGGAGcgucacuAGCACCuAUAuuuCGGUCGCCg -3'
miRNA:   3'- gAGCCUC-------UUGUGG-UAUuu-GCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 17291 0.75 0.806727
Target:  5'- -gCGGAGGGCugcCCAUcuaacuGAAUGGUCGCUg -3'
miRNA:   3'- gaGCCUCUUGu--GGUA------UUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 132289 0.75 0.814792
Target:  5'- aCUCGGAGGacgacgaggguucGCGCCAgcgAGGCGgGUCGUg -3'
miRNA:   3'- -GAGCCUCU-------------UGUGGUa--UUUGC-CAGCGg -5'
24355 3' -50.4 NC_005264.1 + 154484 0.75 0.824458
Target:  5'- -cCGGuaAGCAUCAgcGACGGUCGCCc -3'
miRNA:   3'- gaGCCucUUGUGGUauUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 124270 0.74 0.833053
Target:  5'- cCUCGGguacguuuAGAGCGCCGggAGGCGaGUCGCg -3'
miRNA:   3'- -GAGCC--------UCUUGUGGUa-UUUGC-CAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.