miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 3' -50.4 NC_005264.1 + 125480 0.66 0.996806
Target:  5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3'
miRNA:   3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5'
24355 3' -50.4 NC_005264.1 + 97422 0.66 0.996806
Target:  5'- uUCGGcaguGAGCGCU----GCGGgCGCCg -3'
miRNA:   3'- gAGCCu---CUUGUGGuauuUGCCaGCGG- -5'
24355 3' -50.4 NC_005264.1 + 94654 0.66 0.996806
Target:  5'- -aUGGAGcACguaGCCAUGAACGuGccCGCCg -3'
miRNA:   3'- gaGCCUCuUG---UGGUAUUUGC-Ca-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 57510 0.66 0.9967
Target:  5'- -cCGGuGAACACCuugauggcguGAUGGUUgGCCa -3'
miRNA:   3'- gaGCCuCUUGUGGuau-------UUGCCAG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 162656 0.66 0.996423
Target:  5'- gCUCGGaAGcGCGCCGgcgggucguagguguACGGUCGgCg -3'
miRNA:   3'- -GAGCC-UCuUGUGGUauu------------UGCCAGCgG- -5'
24355 3' -50.4 NC_005264.1 + 31530 0.66 0.996248
Target:  5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3'
miRNA:   3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 82252 0.66 0.996248
Target:  5'- uUCGGGGcucgcgacaggcGGCACCGgagcgcGAAgGGUcCGCCg -3'
miRNA:   3'- gAGCCUC------------UUGUGGUa-----UUUgCCA-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 161933 0.66 0.996248
Target:  5'- --aGGAGAuACACgAUAAuCGGuacgUCGCCu -3'
miRNA:   3'- gagCCUCU-UGUGgUAUUuGCC----AGCGG- -5'
24355 3' -50.4 NC_005264.1 + 146824 0.66 0.996248
Target:  5'- -aCGGAG-GCGC----GGCGGUCGUCg -3'
miRNA:   3'- gaGCCUCuUGUGguauUUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 99784 0.66 0.996248
Target:  5'- -cUGGAGAccgagaucaaGCgGCCGaggcGAUGGUCGCCg -3'
miRNA:   3'- gaGCCUCU----------UG-UGGUau--UUGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 150557 0.66 0.996248
Target:  5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3'
miRNA:   3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5'
24355 3' -50.4 NC_005264.1 + 118659 0.67 0.995876
Target:  5'- -gUGGAGGcuggaugcacuccacAUGCCAUuuacGCGGUUGCCc -3'
miRNA:   3'- gaGCCUCU---------------UGUGGUAuu--UGCCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 97312 0.67 0.995611
Target:  5'- aCUa-GAGGGCGCCccgGUGccaAGCaGGUCGCCg -3'
miRNA:   3'- -GAgcCUCUUGUGG---UAU---UUG-CCAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 18525 0.67 0.995611
Target:  5'- aUCGG-GGGCGCCGUcucccccuGAgGGcgCGCCg -3'
miRNA:   3'- gAGCCuCUUGUGGUAu-------UUgCCa-GCGG- -5'
24355 3' -50.4 NC_005264.1 + 43629 0.67 0.995611
Target:  5'- gCUCGGaAGcGCGCCGgcga-GGUCGUa -3'
miRNA:   3'- -GAGCC-UCuUGUGGUauuugCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 142554 0.67 0.995611
Target:  5'- cCUCGGGGccgcaAGCGCgCA--GACGGUCcCCu -3'
miRNA:   3'- -GAGCCUC-----UUGUG-GUauUUGCCAGcGG- -5'
24355 3' -50.4 NC_005264.1 + 100168 0.67 0.995543
Target:  5'- aUCGGAcGAuccaggcGCGCCAacgaguuCGGUCGCg -3'
miRNA:   3'- gAGCCU-CU-------UGUGGUauuu---GCCAGCGg -5'
24355 3' -50.4 NC_005264.1 + 98130 0.67 0.994889
Target:  5'- -aCGGAGGACGCaGUAAAC--UCGCUc -3'
miRNA:   3'- gaGCCUCUUGUGgUAUUUGccAGCGG- -5'
24355 3' -50.4 NC_005264.1 + 74491 0.67 0.994889
Target:  5'- gUUGcGAGAGCGCCAaAGGCGGcCagGCUg -3'
miRNA:   3'- gAGC-CUCUUGUGGUaUUUGCCaG--CGG- -5'
24355 3' -50.4 NC_005264.1 + 82934 0.67 0.994889
Target:  5'- uCUUGGuuacauugcGAcguCGCCugcGACGGUCGCCg -3'
miRNA:   3'- -GAGCCu--------CUu--GUGGuauUUGCCAGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.