Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24355 | 3' | -50.4 | NC_005264.1 | + | 125480 | 0.66 | 0.996806 |
Target: 5'- -gCGGAGAACuCCuc-GGCGG-CGCg -3' miRNA: 3'- gaGCCUCUUGuGGuauUUGCCaGCGg -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 97422 | 0.66 | 0.996806 |
Target: 5'- uUCGGcaguGAGCGCU----GCGGgCGCCg -3' miRNA: 3'- gAGCCu---CUUGUGGuauuUGCCaGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 94654 | 0.66 | 0.996806 |
Target: 5'- -aUGGAGcACguaGCCAUGAACGuGccCGCCg -3' miRNA: 3'- gaGCCUCuUG---UGGUAUUUGC-Ca-GCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 57510 | 0.66 | 0.9967 |
Target: 5'- -cCGGuGAACACCuugauggcguGAUGGUUgGCCa -3' miRNA: 3'- gaGCCuCUUGUGGuau-------UUGCCAG-CGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 162656 | 0.66 | 0.996423 |
Target: 5'- gCUCGGaAGcGCGCCGgcgggucguagguguACGGUCGgCg -3' miRNA: 3'- -GAGCC-UCuUGUGGUauu------------UGCCAGCgG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 31530 | 0.66 | 0.996248 |
Target: 5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3' miRNA: 3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 82252 | 0.66 | 0.996248 |
Target: 5'- uUCGGGGcucgcgacaggcGGCACCGgagcgcGAAgGGUcCGCCg -3' miRNA: 3'- gAGCCUC------------UUGUGGUa-----UUUgCCA-GCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 161933 | 0.66 | 0.996248 |
Target: 5'- --aGGAGAuACACgAUAAuCGGuacgUCGCCu -3' miRNA: 3'- gagCCUCU-UGUGgUAUUuGCC----AGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 146824 | 0.66 | 0.996248 |
Target: 5'- -aCGGAG-GCGC----GGCGGUCGUCg -3' miRNA: 3'- gaGCCUCuUGUGguauUUGCCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 99784 | 0.66 | 0.996248 |
Target: 5'- -cUGGAGAccgagaucaaGCgGCCGaggcGAUGGUCGCCg -3' miRNA: 3'- gaGCCUCU----------UG-UGGUau--UUGCCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 150557 | 0.66 | 0.996248 |
Target: 5'- -gCGGGGAGgGCCGUugggguggGGGCGGaCgGCCa -3' miRNA: 3'- gaGCCUCUUgUGGUA--------UUUGCCaG-CGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 118659 | 0.67 | 0.995876 |
Target: 5'- -gUGGAGGcuggaugcacuccacAUGCCAUuuacGCGGUUGCCc -3' miRNA: 3'- gaGCCUCU---------------UGUGGUAuu--UGCCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 97312 | 0.67 | 0.995611 |
Target: 5'- aCUa-GAGGGCGCCccgGUGccaAGCaGGUCGCCg -3' miRNA: 3'- -GAgcCUCUUGUGG---UAU---UUG-CCAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 18525 | 0.67 | 0.995611 |
Target: 5'- aUCGG-GGGCGCCGUcucccccuGAgGGcgCGCCg -3' miRNA: 3'- gAGCCuCUUGUGGUAu-------UUgCCa-GCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 43629 | 0.67 | 0.995611 |
Target: 5'- gCUCGGaAGcGCGCCGgcga-GGUCGUa -3' miRNA: 3'- -GAGCC-UCuUGUGGUauuugCCAGCGg -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 142554 | 0.67 | 0.995611 |
Target: 5'- cCUCGGGGccgcaAGCGCgCA--GACGGUCcCCu -3' miRNA: 3'- -GAGCCUC-----UUGUG-GUauUUGCCAGcGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 100168 | 0.67 | 0.995543 |
Target: 5'- aUCGGAcGAuccaggcGCGCCAacgaguuCGGUCGCg -3' miRNA: 3'- gAGCCU-CU-------UGUGGUauuu---GCCAGCGg -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 98130 | 0.67 | 0.994889 |
Target: 5'- -aCGGAGGACGCaGUAAAC--UCGCUc -3' miRNA: 3'- gaGCCUCUUGUGgUAUUUGccAGCGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 74491 | 0.67 | 0.994889 |
Target: 5'- gUUGcGAGAGCGCCAaAGGCGGcCagGCUg -3' miRNA: 3'- gAGC-CUCUUGUGGUaUUUGCCaG--CGG- -5' |
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24355 | 3' | -50.4 | NC_005264.1 | + | 82934 | 0.67 | 0.994889 |
Target: 5'- uCUUGGuuacauugcGAcguCGCCugcGACGGUCGCCg -3' miRNA: 3'- -GAGCCu--------CUu--GUGGuauUUGCCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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