miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24355 5' -52.2 NC_005264.1 + 9504 0.74 0.729942
Target:  5'- gCCAGCGUcagGCg--CGGCGCCCUCg- -3'
miRNA:   3'- -GGUCGCAua-UGagaGCUGUGGGAGac -5'
24355 5' -52.2 NC_005264.1 + 16311 0.66 0.990546
Target:  5'- aUguGCGccgcACUCUCGACGCguagCUCUGg -3'
miRNA:   3'- -GguCGCaua-UGAGAGCUGUGg---GAGAC- -5'
24355 5' -52.2 NC_005264.1 + 46602 0.67 0.975749
Target:  5'- aCGGCGga-GCUCcCGGCACCgUCg- -3'
miRNA:   3'- gGUCGCauaUGAGaGCUGUGGgAGac -5'
24355 5' -52.2 NC_005264.1 + 52161 0.69 0.944148
Target:  5'- -uGGCGUuucagguaGCUCUCGGCGCUC-CUGa -3'
miRNA:   3'- ggUCGCAua------UGAGAGCUGUGGGaGAC- -5'
24355 5' -52.2 NC_005264.1 + 52726 0.66 0.986198
Target:  5'- gCGGCG---GCUCUCGGC-CCCUg-- -3'
miRNA:   3'- gGUCGCauaUGAGAGCUGuGGGAgac -5'
24355 5' -52.2 NC_005264.1 + 61419 0.67 0.973104
Target:  5'- uCCGGgucuCGUAUGCUUUCGGCgGCCCgCUc -3'
miRNA:   3'- -GGUC----GCAUAUGAGAGCUG-UGGGaGAc -5'
24355 5' -52.2 NC_005264.1 + 108931 0.66 0.984451
Target:  5'- gCC-GCGUG-GCUUUCaGCACCCUgUGg -3'
miRNA:   3'- -GGuCGCAUaUGAGAGcUGUGGGAgAC- -5'
24355 5' -52.2 NC_005264.1 + 114794 0.67 0.973104
Target:  5'- cCCcGCGgggaaAUGC-CUCGACAgCUUCUGg -3'
miRNA:   3'- -GGuCGCa----UAUGaGAGCUGUgGGAGAC- -5'
24355 5' -52.2 NC_005264.1 + 116561 0.66 0.984451
Target:  5'- gCGGCGUcgAUGCgcagCUCGGCgACCC-CUa -3'
miRNA:   3'- gGUCGCA--UAUGa---GAGCUG-UGGGaGAc -5'
24355 5' -52.2 NC_005264.1 + 128531 0.74 0.729942
Target:  5'- gCCAGCGUcagGCg--CGGCGCCCUCg- -3'
miRNA:   3'- -GGUCGCAua-UGagaGCUGUGGGAGac -5'
24355 5' -52.2 NC_005264.1 + 128874 0.69 0.948575
Target:  5'- gCCAGCGgacaGCUUgCGGCACCgCUCg- -3'
miRNA:   3'- -GGUCGCaua-UGAGaGCUGUGG-GAGac -5'
24355 5' -52.2 NC_005264.1 + 135893 0.67 0.980459
Target:  5'- cCCGGCGg--ACU-UCGAgUACCCUCUc -3'
miRNA:   3'- -GGUCGCauaUGAgAGCU-GUGGGAGAc -5'
24355 5' -52.2 NC_005264.1 + 136339 0.69 0.929409
Target:  5'- gCGGCGUAgaaGCUggUUCGGCgccgcacggGCCCUCUGu -3'
miRNA:   3'- gGUCGCAUa--UGA--GAGCUG---------UGGGAGAC- -5'
24355 5' -52.2 NC_005264.1 + 141329 1.12 0.005172
Target:  5'- cCCAGCGUAUACUCUCGACACCCUCUGg -3'
miRNA:   3'- -GGUCGCAUAUGAGAGCUGUGGGAGAC- -5'
24355 5' -52.2 NC_005264.1 + 145174 0.66 0.986853
Target:  5'- gCCGGCGUG-ACUCUgaguugccgcuaggcCGACACCUgagCa- -3'
miRNA:   3'- -GGUCGCAUaUGAGA---------------GCUGUGGGa--Gac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.