miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24356 5' -57.5 NC_005264.1 + 140352 1.08 0.00246
Target:  5'- aUGCCCGCAGUGAUGCGAUAGGCCGAGc -3'
miRNA:   3'- -ACGGGCGUCACUACGCUAUCCGGCUC- -5'
24356 5' -57.5 NC_005264.1 + 125595 0.72 0.516122
Target:  5'- cGUCCaCGGUGAUGCGccccccagGGGCCGAc -3'
miRNA:   3'- aCGGGcGUCACUACGCua------UCCGGCUc -5'
24356 5' -57.5 NC_005264.1 + 21337 0.72 0.516122
Target:  5'- cGCCCGUA--GAUGCGccgGGGCCGGa -3'
miRNA:   3'- aCGGGCGUcaCUACGCua-UCCGGCUc -5'
24356 5' -57.5 NC_005264.1 + 6568 0.72 0.516122
Target:  5'- cGUCCaCGGUGAUGCGccccccagGGGCCGAc -3'
miRNA:   3'- aCGGGcGUCACUACGCua------UCCGGCUc -5'
24356 5' -57.5 NC_005264.1 + 150982 0.71 0.585488
Target:  5'- aGCUCGCgAGUGGcgGCGAcGGGCCGc- -3'
miRNA:   3'- aCGGGCG-UCACUa-CGCUaUCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 31955 0.71 0.585488
Target:  5'- aGCUCGCgAGUGGcgGCGAcGGGCCGc- -3'
miRNA:   3'- aCGGGCG-UCACUa-CGCUaUCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 16480 0.71 0.595579
Target:  5'- cGCagCCGCGGUGGccUGCG--GGGUCGAGg -3'
miRNA:   3'- aCG--GGCGUCACU--ACGCuaUCCGGCUC- -5'
24356 5' -57.5 NC_005264.1 + 27891 0.7 0.615834
Target:  5'- cUGCCCGCGuUGGcuuucgUGCaGAUcGGCCGAGc -3'
miRNA:   3'- -ACGGGCGUcACU------ACG-CUAuCCGGCUC- -5'
24356 5' -57.5 NC_005264.1 + 135006 0.7 0.656429
Target:  5'- cGCCgCGaCAGUGgcGCGAucUAGGCCa-- -3'
miRNA:   3'- aCGG-GC-GUCACuaCGCU--AUCCGGcuc -5'
24356 5' -57.5 NC_005264.1 + 131978 0.7 0.656429
Target:  5'- gGCUCGCgacgacaggccGGUG--GCGGUGGGCCGAc -3'
miRNA:   3'- aCGGGCG-----------UCACuaCGCUAUCCGGCUc -5'
24356 5' -57.5 NC_005264.1 + 4170 0.7 0.656429
Target:  5'- cGCCgCGguGUGGggaaGCGGaGGGuCCGAGg -3'
miRNA:   3'- aCGG-GCguCACUa---CGCUaUCC-GGCUC- -5'
24356 5' -57.5 NC_005264.1 + 123197 0.7 0.656429
Target:  5'- cGCCgCGguGUGGggaaGCGGaGGGuCCGAGg -3'
miRNA:   3'- aCGG-GCguCACUa---CGCUaUCC-GGCUC- -5'
24356 5' -57.5 NC_005264.1 + 18102 0.69 0.696714
Target:  5'- aUGCCgGCAGaUGgcGCGAgAGGCUaaGAGa -3'
miRNA:   3'- -ACGGgCGUC-ACuaCGCUaUCCGG--CUC- -5'
24356 5' -57.5 NC_005264.1 + 1008 0.69 0.716572
Target:  5'- cGCCCGU-GUGGUGgGGgggcagGGGCCGu- -3'
miRNA:   3'- aCGGGCGuCACUACgCUa-----UCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 94675 0.68 0.726399
Target:  5'- gUGCCCGCcGUGAUGCaGAUGuuGCaCGAa -3'
miRNA:   3'- -ACGGGCGuCACUACG-CUAUc-CG-GCUc -5'
24356 5' -57.5 NC_005264.1 + 92029 0.68 0.745803
Target:  5'- cGCCCGCGaaagaaauGUGGagGuCGGUGGGCCGc- -3'
miRNA:   3'- aCGGGCGU--------CACUa-C-GCUAUCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 81641 0.68 0.764815
Target:  5'- aUGCCuCGCGGUGGUGaug-GGGCUGu- -3'
miRNA:   3'- -ACGG-GCGUCACUACgcuaUCCGGCuc -5'
24356 5' -57.5 NC_005264.1 + 156123 0.68 0.764815
Target:  5'- gGCCCGCccaaGGUGGUGgGcaggacgAGGgCGAGg -3'
miRNA:   3'- aCGGGCG----UCACUACgCua-----UCCgGCUC- -5'
24356 5' -57.5 NC_005264.1 + 37096 0.68 0.764815
Target:  5'- gGCCCGCccaaGGUGGUGgGcaggacgAGGgCGAGg -3'
miRNA:   3'- aCGGGCG----UCACUACgCua-----UCCgGCUC- -5'
24356 5' -57.5 NC_005264.1 + 104864 0.68 0.773224
Target:  5'- cGCCgCGCGGggacuccGAUGaCGAUAGGCacaagcaCGAGa -3'
miRNA:   3'- aCGG-GCGUCa------CUAC-GCUAUCCG-------GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.