Results 21 - 40 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 124292 | 0.68 | 0.630697 |
Target: 5'- gGGAgGCGaGUCG-CGGCCGgacgGCGGGg -3' miRNA: 3'- -CUUgCGCaCGGCaGCCGGCag--CGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 49793 | 0.68 | 0.630697 |
Target: 5'- --uCGCGUaagaucGCCG-CGGCCcaGUCGCGGc -3' miRNA: 3'- cuuGCGCA------CGGCaGCCGG--CAGCGCCc -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 5265 | 0.68 | 0.630697 |
Target: 5'- gGGAgGCGaGUCG-CGGCCGgacgGCGGGg -3' miRNA: 3'- -CUUgCGCaCGGCaGCCGGCag--CGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 147021 | 0.68 | 0.620996 |
Target: 5'- cGAGCGCGaacGgCGUCGuuCGUCGuCGGGc -3' miRNA: 3'- -CUUGCGCa--CgGCAGCcgGCAGC-GCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 19417 | 0.68 | 0.620996 |
Target: 5'- gGGAgGCGaggcGCCGggugUGGCCGcggggCGCGGGu -3' miRNA: 3'- -CUUgCGCa---CGGCa---GCCGGCa----GCGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 95367 | 0.68 | 0.620996 |
Target: 5'- cGGCGCGUGCCGcCaaacuGCCaggCGUGGGa -3' miRNA: 3'- cUUGCGCACGGCaGc----CGGca-GCGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 50594 | 0.68 | 0.620027 |
Target: 5'- uGAGCGCaaauuucuUGCCGUCGGCgGUaccguacucgaacCGCGGc -3' miRNA: 3'- -CUUGCGc-------ACGGCAGCCGgCA-------------GCGCCc -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 92988 | 0.69 | 0.601625 |
Target: 5'- -cACGCGccgcaGCaCG-CGGCCGUaGCGGGg -3' miRNA: 3'- cuUGCGCa----CG-GCaGCCGGCAgCGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 24200 | 0.69 | 0.601625 |
Target: 5'- uGGCGCgGUGCCGgUGGCCGaagccagcgCGcCGGGa -3' miRNA: 3'- cUUGCG-CACGGCaGCCGGCa--------GC-GCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 43882 | 0.69 | 0.599692 |
Target: 5'- cGAGCGCGgcaaagggggcGCCGgagacgauagcgCGGCCGUCGCcucgacgucgaGGGc -3' miRNA: 3'- -CUUGCGCa----------CGGCa-----------GCCGGCAGCG-----------CCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 139437 | 0.69 | 0.563173 |
Target: 5'- -uACGCGUGC--UCGGCCGUCacaagaggGCGGc -3' miRNA: 3'- cuUGCGCACGgcAGCCGGCAG--------CGCCc -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 65742 | 0.69 | 0.563173 |
Target: 5'- cGAUGUGUgguccGCCGUCGGCCGgCGCa-- -3' miRNA: 3'- cUUGCGCA-----CGGCAGCCGGCaGCGccc -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 54590 | 0.69 | 0.563173 |
Target: 5'- uGAGCGUGgucaacGCCGgccUCGGCgCGU-GCGGGa -3' miRNA: 3'- -CUUGCGCa-----CGGC---AGCCG-GCAgCGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 125236 | 0.69 | 0.552705 |
Target: 5'- aGACGCGUccuuugaccccccGCCG-CGGCCGcCGCGa- -3' miRNA: 3'- cUUGCGCA-------------CGGCaGCCGGCaGCGCcc -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 6209 | 0.69 | 0.552705 |
Target: 5'- aGACGCGUccuuugaccccccGCCG-CGGCCGcCGCGa- -3' miRNA: 3'- cUUGCGCA-------------CGGCaGCCGGCaGCGCcc -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 142966 | 0.7 | 0.533828 |
Target: 5'- uAGCGCG-GCCG-CGGCgGUCucucgggcaugagGCGGGc -3' miRNA: 3'- cUUGCGCaCGGCaGCCGgCAG-------------CGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 103127 | 0.7 | 0.516112 |
Target: 5'- cGGCGCGguaGCCGcCGGCgCGgcgCGCGGc -3' miRNA: 3'- cUUGCGCa--CGGCaGCCG-GCa--GCGCCc -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 6610 | 0.71 | 0.48864 |
Target: 5'- cGAGCGCGUgggaaauuauGCCcaCGGCCa-CGCGGGg -3' miRNA: 3'- -CUUGCGCA----------CGGcaGCCGGcaGCGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 125637 | 0.71 | 0.48864 |
Target: 5'- cGAGCGCGUgggaaauuauGCCcaCGGCCa-CGCGGGg -3' miRNA: 3'- -CUUGCGCA----------CGGcaGCCGGcaGCGCCC- -5' |
|||||||
24357 | 3' | -60.9 | NC_005264.1 | + | 42071 | 0.71 | 0.461875 |
Target: 5'- cGGCGCGUGgCGUCaGCUG-CGcCGGGa -3' miRNA: 3'- cUUGCGCACgGCAGcCGGCaGC-GCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home