miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 63288 0.67 0.989652
Target:  5'- aGgCCGCAAGAAAA---CGCGUCCUc -3'
miRNA:   3'- aUgGGCGUUUUUUUugcGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 39227 0.67 0.989652
Target:  5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3'
miRNA:   3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 117314 0.67 0.988054
Target:  5'- cGCgUGCGAcuGAGAAGCGUGCGcgggucgUCCCu -3'
miRNA:   3'- aUGgGCGUU--UUUUUUGCGCGC-------AGGGu -5'
24357 5' -50.6 NC_005264.1 + 121416 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 33429 0.67 0.98661
Target:  5'- cGCCCGCGAGAAuAAACcccCGCGcugacuauuaauUCCCGc -3'
miRNA:   3'- aUGGGCGUUUUU-UUUGc--GCGC------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 13898 0.67 0.98661
Target:  5'- cGCCUGCAGGcgacGGGGCGCGaaCGUCCa- -3'
miRNA:   3'- aUGGGCGUUUu---UUUUGCGC--GCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 45566 0.67 0.984852
Target:  5'- cGCCCGUGuc---GGCGCGCacgaGUCCCu -3'
miRNA:   3'- aUGGGCGUuuuuuUUGCGCG----CAGGGu -5'
24357 5' -50.6 NC_005264.1 + 45675 0.67 0.984852
Target:  5'- gGCCCGCuucauguGAGAGuAAgGCGCGaaguugCCCAg -3'
miRNA:   3'- aUGGGCGu------UUUUU-UUgCGCGCa-----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 155985 0.67 0.982923
Target:  5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3'
miRNA:   3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5'
24357 5' -50.6 NC_005264.1 + 133498 0.67 0.98272
Target:  5'- gUACCCgGCAGAcgucguagccgcaGGAGGCGCuGUGUCCa- -3'
miRNA:   3'- -AUGGG-CGUUU-------------UUUUUGCG-CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 34425 0.67 0.989652
Target:  5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3'
miRNA:   3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 62596 0.67 0.988207
Target:  5'- gACCgCGCGAAGuagcGGCGCGgaCGUUCCGa -3'
miRNA:   3'- aUGG-GCGUUUUuu--UUGCGC--GCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 161470 0.67 0.99019
Target:  5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3'
miRNA:   3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 158254 0.67 0.989652
Target:  5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3'
miRNA:   3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 153452 0.67 0.989652
Target:  5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3'
miRNA:   3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 93579 0.67 0.989514
Target:  5'- cGCCCcauggcaGCGGAuGAGGCGCGCGaguaCCAg -3'
miRNA:   3'- aUGGG-------CGUUUuUUUUGCGCGCag--GGU- -5'
24357 5' -50.6 NC_005264.1 + 52709 0.67 0.988207
Target:  5'- cGCCCGCccccAAAAGCGCgGCGgcUCUCGg -3'
miRNA:   3'- aUGGGCGuuu-UUUUUGCG-CGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 34199 0.67 0.988207
Target:  5'- cAgCCGCGGcauGGAGCgcauacuugGCGUGUCCCAa -3'
miRNA:   3'- aUgGGCGUUuu-UUUUG---------CGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 8906 0.67 0.988207
Target:  5'- --gUCGCu--GGAGACGCGCGUCUUc -3'
miRNA:   3'- augGGCGuuuUUUUUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 717 0.67 0.988207
Target:  5'- aUGCgCCGCGAAAGAGauuACGC-CGaUCCUAg -3'
miRNA:   3'- -AUG-GGCGUUUUUUU---UGCGcGC-AGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.