miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 31698 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 154229 0.68 0.975763
Target:  5'- cGCCUaccggugcgcguuGCGGAGGAAcACGCGCGUCUg- -3'
miRNA:   3'- aUGGG-------------CGUUUUUUU-UGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 150724 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 56079 0.68 0.976024
Target:  5'- cGCCCGCu-----GACGCcGCGUCUUg -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCG-CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 119225 0.68 0.970411
Target:  5'- gACCaCGCGAGGuuuGGCGCGCaaucGUaCCCAa -3'
miRNA:   3'- aUGG-GCGUUUUuu-UUGCGCG----CA-GGGU- -5'
24357 5' -50.6 NC_005264.1 + 29200 0.68 0.970411
Target:  5'- gGCgUGCAAGuguuGCGUGCGUCaCCGa -3'
miRNA:   3'- aUGgGCGUUUuuuuUGCGCGCAG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 8593 0.68 0.970411
Target:  5'- --aCCGCAGAc---GCGCGUGUUCCu -3'
miRNA:   3'- augGGCGUUUuuuuUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 16764 0.68 0.970411
Target:  5'- gACCCGCGc-GGGGGCGCGCuGUUCgGg -3'
miRNA:   3'- aUGGGCGUuuUUUUUGCGCG-CAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 93163 0.68 0.970411
Target:  5'- --aCCGCGGAGAAccaaggccccAGCGcCGCGUgCCCGa -3'
miRNA:   3'- augGGCGUUUUUU----------UUGC-GCGCA-GGGU- -5'
24357 5' -50.6 NC_005264.1 + 14875 0.68 0.973324
Target:  5'- gGCCaUGUAcacuAGACGCGCGUCCa- -3'
miRNA:   3'- aUGG-GCGUuuuuUUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 59792 0.68 0.973324
Target:  5'- cGCCCGCAGGGGGcGCGUaGCG-CaCCAu -3'
miRNA:   3'- aUGGGCGUUUUUUuUGCG-CGCaG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 125788 0.68 0.970411
Target:  5'- cUGCCCGUAGuacccAAUGcCGUGUCCCc -3'
miRNA:   3'- -AUGGGCGUUuuuu-UUGC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 78662 0.67 0.98272
Target:  5'- gUACgCCGCAGAAGuaaacagguccGGCGCGCGcgcugcgaccacuUCCCGg -3'
miRNA:   3'- -AUG-GGCGUUUUUu----------UUGCGCGC-------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 13898 0.67 0.98661
Target:  5'- cGCCUGCAGGcgacGGGGCGCGaaCGUCCa- -3'
miRNA:   3'- aUGGGCGUUUu---UUUUGCGC--GCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 33429 0.67 0.98661
Target:  5'- cGCCCGCGAGAAuAAACcccCGCGcugacuauuaauUCCCGc -3'
miRNA:   3'- aUGGGCGUUUUU-UUUGc--GCGC------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 51357 0.67 0.984852
Target:  5'- --gCCGaCAGGAAGGGCGCaGCGUCUg- -3'
miRNA:   3'- augGGC-GUUUUUUUUGCG-CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 2389 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 121416 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 117314 0.67 0.988054
Target:  5'- cGCgUGCGAcuGAGAAGCGUGCGcgggucgUCCCu -3'
miRNA:   3'- aUGgGCGUU--UUUUUUGCGCGC-------AGGGu -5'
24357 5' -50.6 NC_005264.1 + 16448 0.67 0.988207
Target:  5'- cUGCCCGCGGGuguGAACGUG-GUCgaaCCAg -3'
miRNA:   3'- -AUGGGCGUUUuu-UUUGCGCgCAG---GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.