Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24357 | 5' | -50.6 | NC_005264.1 | + | 51357 | 0.67 | 0.984852 |
Target: 5'- --gCCGaCAGGAAGGGCGCaGCGUCUg- -3' miRNA: 3'- augGGC-GUUUUUUUUGCG-CGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 54289 | 0.67 | 0.98661 |
Target: 5'- gGCCaauuggGCGAAAGAGACGUGCGaCgCAg -3' miRNA: 3'- aUGGg-----CGUUUUUUUUGCGCGCaGgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 13898 | 0.67 | 0.98661 |
Target: 5'- cGCCUGCAGGcgacGGGGCGCGaaCGUCCa- -3' miRNA: 3'- aUGGGCGUUUu---UUUUGCGC--GCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 33429 | 0.67 | 0.98661 |
Target: 5'- cGCCCGCGAGAAuAAACcccCGCGcugacuauuaauUCCCGc -3' miRNA: 3'- aUGGGCGUUUUU-UUUGc--GCGC------------AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 2389 | 0.67 | 0.98661 |
Target: 5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3' miRNA: 3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 121416 | 0.67 | 0.98661 |
Target: 5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3' miRNA: 3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 117314 | 0.67 | 0.988054 |
Target: 5'- cGCgUGCGAcuGAGAAGCGUGCGcgggucgUCCCu -3' miRNA: 3'- aUGgGCGUU--UUUUUUGCGCGC-------AGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 44944 | 0.67 | 0.988207 |
Target: 5'- gGCCCGUu------GCGCGCGugacUCCCu -3' miRNA: 3'- aUGGGCGuuuuuuuUGCGCGC----AGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 16448 | 0.67 | 0.988207 |
Target: 5'- cUGCCCGCGGGuguGAACGUG-GUCgaaCCAg -3' miRNA: 3'- -AUGGGCGUUUuu-UUUGCGCgCAG---GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 717 | 0.67 | 0.988207 |
Target: 5'- aUGCgCCGCGAAAGAGauuACGC-CGaUCCUAg -3' miRNA: 3'- -AUG-GGCGUUUUUUU---UGCGcGC-AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 8906 | 0.67 | 0.988207 |
Target: 5'- --gUCGCu--GGAGACGCGCGUCUUc -3' miRNA: 3'- augGGCGuuuUUUUUGCGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 34199 | 0.67 | 0.988207 |
Target: 5'- cAgCCGCGGcauGGAGCgcauacuugGCGUGUCCCAa -3' miRNA: 3'- aUgGGCGUUuu-UUUUG---------CGCGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 52709 | 0.67 | 0.988207 |
Target: 5'- cGCCCGCccccAAAAGCGCgGCGgcUCUCGg -3' miRNA: 3'- aUGGGCGuuu-UUUUUGCG-CGC--AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 62596 | 0.67 | 0.988207 |
Target: 5'- gACCgCGCGAAGuagcGGCGCGgaCGUUCCGa -3' miRNA: 3'- aUGG-GCGUUUUuu--UUGCGC--GCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 148571 | 0.67 | 0.989514 |
Target: 5'- gGCCCGCGAcgugcccGAGGAACGCGCu----- -3' miRNA: 3'- aUGGGCGUU-------UUUUUUGCGCGcagggu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 93579 | 0.67 | 0.989514 |
Target: 5'- cGCCCcauggcaGCGGAuGAGGCGCGCGaguaCCAg -3' miRNA: 3'- aUGGG-------CGUUUuUUUUGCGCGCag--GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 34425 | 0.67 | 0.989652 |
Target: 5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3' miRNA: 3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 153452 | 0.67 | 0.989652 |
Target: 5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3' miRNA: 3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 158254 | 0.67 | 0.989652 |
Target: 5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3' miRNA: 3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 63288 | 0.67 | 0.989652 |
Target: 5'- aGgCCGCAAGAAAA---CGCGUCCUc -3' miRNA: 3'- aUgGGCGUUUUUUUugcGCGCAGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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