miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 121416 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 120292 0.72 0.89061
Target:  5'- cUGCCgGCGc-GAAGACGCGCGgaagcugcgCCCAc -3'
miRNA:   3'- -AUGGgCGUuuUUUUUGCGCGCa--------GGGU- -5'
24357 5' -50.6 NC_005264.1 + 119225 0.68 0.970411
Target:  5'- gACCaCGCGAGGuuuGGCGCGCaaucGUaCCCAa -3'
miRNA:   3'- aUGG-GCGUUUUuu-UUGCGCG----CA-GGGU- -5'
24357 5' -50.6 NC_005264.1 + 117314 0.67 0.988054
Target:  5'- cGCgUGCGAcuGAGAAGCGUGCGcgggucgUCCCu -3'
miRNA:   3'- aUGgGCGUU--UUUUUUGCGCGC-------AGGGu -5'
24357 5' -50.6 NC_005264.1 + 116367 0.66 0.994931
Target:  5'- aACCCGCGAcuccacaggcAAAGAGCGcCGCGcaaaagCCgCAg -3'
miRNA:   3'- aUGGGCGUU----------UUUUUUGC-GCGCa-----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 115815 0.66 0.994931
Target:  5'- --aCCGCG--GGAGGC-CGCGUUCCAc -3'
miRNA:   3'- augGGCGUuuUUUUUGcGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 112283 0.66 0.995662
Target:  5'- -uCCCGCAc-----GCGCGCG-CCUAg -3'
miRNA:   3'- auGGGCGUuuuuuuUGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 111422 0.69 0.960318
Target:  5'- gGCCUGcCGGAAAccAUGCGCGUUCUg -3'
miRNA:   3'- aUGGGC-GUUUUUuuUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 104147 0.66 0.994931
Target:  5'- gACCCGaaccgaauAGAAAACGCGUG-CCUc -3'
miRNA:   3'- aUGGGCguu-----UUUUUUGCGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 98568 0.7 0.938643
Target:  5'- gUGCgCCGCAAGAuGAACG-GCG-CCCGc -3'
miRNA:   3'- -AUG-GGCGUUUUuUUUGCgCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 93579 0.67 0.989514
Target:  5'- cGCCCcauggcaGCGGAuGAGGCGCGCGaguaCCAg -3'
miRNA:   3'- aUGGG-------CGUUUuUUUUGCGCGCag--GGU- -5'
24357 5' -50.6 NC_005264.1 + 93163 0.68 0.970411
Target:  5'- --aCCGCGGAGAAccaaggccccAGCGcCGCGUgCCCGa -3'
miRNA:   3'- augGGCGUUUUUU----------UUGC-GCGCA-GGGU- -5'
24357 5' -50.6 NC_005264.1 + 92029 0.71 0.900199
Target:  5'- cGCCCGCGAAAGAAAUGUggaggucggugggccGCGcUCCUu -3'
miRNA:   3'- aUGGGCGUUUUUUUUGCG---------------CGC-AGGGu -5'
24357 5' -50.6 NC_005264.1 + 87879 0.77 0.63609
Target:  5'- uUACCCGCAGuac-GACGCcacccucgucGCGUCCCGa -3'
miRNA:   3'- -AUGGGCGUUuuuuUUGCG----------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 87438 0.66 0.992014
Target:  5'- cUGCCCGCGgccgcgcAGAcgGugGCGCG-CaCCAc -3'
miRNA:   3'- -AUGGGCGU-------UUUuuUugCGCGCaG-GGU- -5'
24357 5' -50.6 NC_005264.1 + 84863 0.68 0.978035
Target:  5'- cGCCCGCuccggu-ACGCGCGgcgCCg- -3'
miRNA:   3'- aUGGGCGuuuuuuuUGCGCGCa--GGgu -5'
24357 5' -50.6 NC_005264.1 + 84445 0.66 0.992125
Target:  5'- aGCCCGCu-GAGAcACGCGCGaCgUAu -3'
miRNA:   3'- aUGGGCGuuUUUUuUGCGCGCaGgGU- -5'
24357 5' -50.6 NC_005264.1 + 80628 0.67 0.984852
Target:  5'- gGCCC-CGAGGAcgauGGACGCGCGg-CCAc -3'
miRNA:   3'- aUGGGcGUUUUU----UUUGCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 78662 0.67 0.98272
Target:  5'- gUACgCCGCAGAAGuaaacagguccGGCGCGCGcgcugcgaccacuUCCCGg -3'
miRNA:   3'- -AUG-GGCGUUUUUu----------UUGCGCGC-------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 77835 0.67 0.984852
Target:  5'- gGCCUGCGAcAAGAACaacCGUGUCCg- -3'
miRNA:   3'- aUGGGCGUUuUUUUUGc--GCGCAGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.