miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 19060 0.83 0.361454
Target:  5'- aUACCCGCG--GGAAGCGCGCuUCCCGc -3'
miRNA:   3'- -AUGGGCGUuuUUUUUGCGCGcAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 111422 0.69 0.960318
Target:  5'- gGCCUGcCGGAAAccAUGCGCGUUCUg -3'
miRNA:   3'- aUGGGC-GUUUUUuuUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 69357 0.69 0.963914
Target:  5'- gGCCCGUuugu--GGCGCGUGUCgCGu -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 45566 0.67 0.984852
Target:  5'- cGCCCGUGuc---GGCGCGCacgaGUCCCu -3'
miRNA:   3'- aUGGGCGUuuuuuUUGCGCG----CAGGGu -5'
24357 5' -50.6 NC_005264.1 + 45675 0.67 0.984852
Target:  5'- gGCCCGCuucauguGAGAGuAAgGCGCGaaguugCCCAg -3'
miRNA:   3'- aUGGGCGu------UUUUU-UUgCGCGCa-----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 155985 0.67 0.982923
Target:  5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3'
miRNA:   3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5'
24357 5' -50.6 NC_005264.1 + 133498 0.67 0.98272
Target:  5'- gUACCCgGCAGAcgucguagccgcaGGAGGCGCuGUGUCCa- -3'
miRNA:   3'- -AUGGG-CGUUU-------------UUUUUGCG-CGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 150724 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 56079 0.68 0.976024
Target:  5'- cGCCCGCu-----GACGCcGCGUCUUg -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCG-CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 14875 0.68 0.973324
Target:  5'- gGCCaUGUAcacuAGACGCGCGUCCa- -3'
miRNA:   3'- aUGG-GCGUuuuuUUUGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 93163 0.68 0.970411
Target:  5'- --aCCGCGGAGAAccaaggccccAGCGcCGCGUgCCCGa -3'
miRNA:   3'- augGGCGUUUUUU----------UUGC-GCGCA-GGGU- -5'
24357 5' -50.6 NC_005264.1 + 16764 0.68 0.970411
Target:  5'- gACCCGCGc-GGGGGCGCGCuGUUCgGg -3'
miRNA:   3'- aUGGGCGUuuUUUUUGCGCG-CAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 8593 0.68 0.970411
Target:  5'- --aCCGCAGAc---GCGCGUGUUCCu -3'
miRNA:   3'- augGGCGUUUuuuuUGCGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 130423 0.69 0.967276
Target:  5'- -uCCUGCAGAGGGAGUG-GCGUUCCAg -3'
miRNA:   3'- auGGGCGUUUUUUUUGCgCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 6889 0.69 0.963914
Target:  5'- -gUCCGCGAGc----CGCGCaGUCCCAg -3'
miRNA:   3'- auGGGCGUUUuuuuuGCGCG-CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 30357 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 124425 0.66 0.995662
Target:  5'- aACUCGCA----GAGCGCGUGcUCCgCGg -3'
miRNA:   3'- aUGGGCGUuuuuUUUGCGCGC-AGG-GU- -5'
24357 5' -50.6 NC_005264.1 + 127949 0.66 0.995662
Target:  5'- cUGCCCuCGAAGAAGGCG-GCGgCCUg -3'
miRNA:   3'- -AUGGGcGUUUUUUUUGCgCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 38769 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 139837 1.07 0.011519
Target:  5'- gUACCCGCAAAAAAAACGCGCGUCCCAu -3'
miRNA:   3'- -AUGGGCGUUUUUUUUGCGCGCAGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.