Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24357 | 5' | -50.6 | NC_005264.1 | + | 124425 | 0.66 | 0.995662 |
Target: 5'- aACUCGCA----GAGCGCGUGcUCCgCGg -3' miRNA: 3'- aUGGGCGUuuuuUUUGCGCGC-AGG-GU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 127949 | 0.66 | 0.995662 |
Target: 5'- cUGCCCuCGAAGAAGGCG-GCGgCCUg -3' miRNA: 3'- -AUGGGcGUUUUUUUUGCgCGCaGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 38769 | 0.66 | 0.995662 |
Target: 5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3' miRNA: 3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 84445 | 0.66 | 0.992125 |
Target: 5'- aGCCCGCu-GAGAcACGCGCGaCgUAu -3' miRNA: 3'- aUGGGCGuuUUUUuUGCGCGCaGgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 155852 | 0.66 | 0.992125 |
Target: 5'- cGCCCGCAGGGAcAAcccCGCGCcaacUCUCAu -3' miRNA: 3'- aUGGGCGUUUUUuUU---GCGCGc---AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 58497 | 0.66 | 0.990955 |
Target: 5'- aUGCgCGCAA---GAGCGCgguGCGUCCUc -3' miRNA: 3'- -AUGgGCGUUuuuUUUGCG---CGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 51357 | 0.67 | 0.984852 |
Target: 5'- --gCCGaCAGGAAGGGCGCaGCGUCUg- -3' miRNA: 3'- augGGC-GUUUUUUUUGCG-CGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 2389 | 0.67 | 0.98661 |
Target: 5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3' miRNA: 3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 54289 | 0.67 | 0.98661 |
Target: 5'- gGCCaauuggGCGAAAGAGACGUGCGaCgCAg -3' miRNA: 3'- aUGGg-----CGUUUUUUUUGCGCGCaGgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 44944 | 0.67 | 0.988207 |
Target: 5'- gGCCCGUu------GCGCGCGugacUCCCu -3' miRNA: 3'- aUGGGCGuuuuuuuUGCGCGC----AGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 148571 | 0.67 | 0.989514 |
Target: 5'- gGCCCGCGAcgugcccGAGGAACGCGCu----- -3' miRNA: 3'- aUGGGCGUU-------UUUUUUGCGCGcagggu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 34425 | 0.67 | 0.989652 |
Target: 5'- uUGCCUGCGAguGAGGAAUcuguuaGUGUCCCGg -3' miRNA: 3'- -AUGGGCGUU--UUUUUUGcg----CGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 39227 | 0.67 | 0.989652 |
Target: 5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3' miRNA: 3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 63288 | 0.67 | 0.989652 |
Target: 5'- aGgCCGCAAGAAAA---CGCGUCCUc -3' miRNA: 3'- aUgGGCGUUUUUUUugcGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 123659 | 0.67 | 0.989652 |
Target: 5'- gAUgCGCGGuAGAGuCGCGCG-CCCAg -3' miRNA: 3'- aUGgGCGUUuUUUUuGCGCGCaGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 160399 | 0.67 | 0.989652 |
Target: 5'- --gCCGCAAGGAAGAgugcaggcugcUGUGCG-CCCAg -3' miRNA: 3'- augGGCGUUUUUUUU-----------GCGCGCaGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 42443 | 0.67 | 0.99019 |
Target: 5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3' miRNA: 3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 138798 | 0.66 | 0.990955 |
Target: 5'- -gUCCGCcauAGAGACGUGCGUCaCGa -3' miRNA: 3'- auGGGCGuuuUUUUUGCGCGCAGgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 157293 | 0.66 | 0.990955 |
Target: 5'- cACCUGCGAAGAGAAacccgcucCGCGCGagacgCCgCGg -3' miRNA: 3'- aUGGGCGUUUUUUUU--------GCGCGCa----GG-GU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 33701 | 0.66 | 0.990955 |
Target: 5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3' miRNA: 3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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