miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 154229 0.68 0.975763
Target:  5'- cGCCUaccggugcgcguuGCGGAGGAAcACGCGCGUCUg- -3'
miRNA:   3'- aUGGG-------------CGUUUUUUU-UGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 123659 0.67 0.989652
Target:  5'- gAUgCGCGGuAGAGuCGCGCG-CCCAg -3'
miRNA:   3'- aUGgGCGUUuUUUUuGCGCGCaGGGU- -5'
24357 5' -50.6 NC_005264.1 + 104147 0.66 0.994931
Target:  5'- gACCCGaaccgaauAGAAAACGCGUG-CCUc -3'
miRNA:   3'- aUGGGCguu-----UUUUUUGCGCGCaGGGu -5'
24357 5' -50.6 NC_005264.1 + 31698 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 116367 0.66 0.994931
Target:  5'- aACCCGCGAcuccacaggcAAAGAGCGcCGCGcaaaagCCgCAg -3'
miRNA:   3'- aUGGGCGUU----------UUUUUUGC-GCGCa-----GG-GU- -5'
24357 5' -50.6 NC_005264.1 + 42173 0.72 0.879058
Target:  5'- cGCCCGgAAAGAGAuggcagguuggagccGCGCccaccgGCGUCCCGu -3'
miRNA:   3'- aUGGGCgUUUUUUU---------------UGCG------CGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 74061 0.66 0.994104
Target:  5'- gGCCCuCGAAGGGAACGCgGCaUCCgGa -3'
miRNA:   3'- aUGGGcGUUUUUUUUGCG-CGcAGGgU- -5'
24357 5' -50.6 NC_005264.1 + 2725 0.72 0.886351
Target:  5'- cGCCCGCGGccgggcccgucuucuAGGuuuAACgGCGCGUCCCc -3'
miRNA:   3'- aUGGGCGUU---------------UUUu--UUG-CGCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 120292 0.72 0.89061
Target:  5'- cUGCCgGCGc-GAAGACGCGCGgaagcugcgCCCAc -3'
miRNA:   3'- -AUGGgCGUuuUUUUUGCGCGCa--------GGGU- -5'
24357 5' -50.6 NC_005264.1 + 148464 0.7 0.933544
Target:  5'- cGCCCGCGAGGGAAugaaGCGC-UCCa- -3'
miRNA:   3'- aUGGGCGUUUUUUUug--CGCGcAGGgu -5'
24357 5' -50.6 NC_005264.1 + 55155 0.7 0.948068
Target:  5'- gGCCCGCAAAuccacccuGAAC-CGCGUCUa- -3'
miRNA:   3'- aUGGGCGUUUuu------UUUGcGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 11396 0.69 0.967276
Target:  5'- -uCCUGCAGAGGGAGUG-GCGUUCCAg -3'
miRNA:   3'- auGGGCGUUUUUUUUGCgCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 125788 0.68 0.970411
Target:  5'- cUGCCCGUAGuacccAAUGcCGUGUCCCc -3'
miRNA:   3'- -AUGGGCGUUuuuu-UUGC-GCGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 78662 0.67 0.98272
Target:  5'- gUACgCCGCAGAAGuaaacagguccGGCGCGCGcgcugcgaccacuUCCCGg -3'
miRNA:   3'- -AUG-GGCGUUUUUu----------UUGCGCGC-------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 80628 0.67 0.984852
Target:  5'- gGCCC-CGAGGAcgauGGACGCGCGg-CCAc -3'
miRNA:   3'- aUGGGcGUUUUU----UUUGCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 44944 0.67 0.988207
Target:  5'- gGCCCGUu------GCGCGCGugacUCCCu -3'
miRNA:   3'- aUGGGCGuuuuuuuUGCGCGC----AGGGu -5'
24357 5' -50.6 NC_005264.1 + 39227 0.67 0.989652
Target:  5'- cGCUgGCGGGGAGGGCcUGCGuUCCCGg -3'
miRNA:   3'- aUGGgCGUUUUUUUUGcGCGC-AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 138798 0.66 0.990955
Target:  5'- -gUCCGCcauAGAGACGUGCGUCaCGa -3'
miRNA:   3'- auGGGCGuuuUUUUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 58497 0.66 0.990955
Target:  5'- aUGCgCGCAA---GAGCGCgguGCGUCCUc -3'
miRNA:   3'- -AUGgGCGUUuuuUUUGCG---CGCAGGGu -5'
24357 5' -50.6 NC_005264.1 + 45667 0.66 0.993172
Target:  5'- cGCCaagCGCAGuGAAgcacGugGCGCGaUCCCGg -3'
miRNA:   3'- aUGG---GCGUUuUUU----UugCGCGC-AGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.