miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24357 5' -50.6 NC_005264.1 + 80628 0.67 0.984852
Target:  5'- gGCCC-CGAGGAcgauGGACGCGCGg-CCAc -3'
miRNA:   3'- aUGGGcGUUUUU----UUUGCGCGCagGGU- -5'
24357 5' -50.6 NC_005264.1 + 36958 0.67 0.982923
Target:  5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3'
miRNA:   3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5'
24357 5' -50.6 NC_005264.1 + 78662 0.67 0.98272
Target:  5'- gUACgCCGCAGAAGuaaacagguccGGCGCGCGcgcugcgaccacuUCCCGg -3'
miRNA:   3'- -AUG-GGCGUUUUUu----------UUGCGCGC-------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 31698 0.68 0.976024
Target:  5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3'
miRNA:   3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5'
24357 5' -50.6 NC_005264.1 + 154229 0.68 0.975763
Target:  5'- cGCCUaccggugcgcguuGCGGAGGAAcACGCGCGUCUg- -3'
miRNA:   3'- aUGGG-------------CGUUUUUUU-UGCGCGCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 2389 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 160335 0.71 0.904158
Target:  5'- -cCCCGCGcuGAAGuCGCGCGaggCCCGc -3'
miRNA:   3'- auGGGCGUuuUUUUuGCGCGCa--GGGU- -5'
24357 5' -50.6 NC_005264.1 + 117314 0.67 0.988054
Target:  5'- cGCgUGCGAcuGAGAAGCGUGCGcgggucgUCCCu -3'
miRNA:   3'- aUGgGCGUU--UUUUUUGCGCGC-------AGGGu -5'
24357 5' -50.6 NC_005264.1 + 121416 0.67 0.98661
Target:  5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3'
miRNA:   3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5'
24357 5' -50.6 NC_005264.1 + 33429 0.67 0.98661
Target:  5'- cGCCCGCGAGAAuAAACcccCGCGcugacuauuaauUCCCGc -3'
miRNA:   3'- aUGGGCGUUUUU-UUUGc--GCGC------------AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 13898 0.67 0.98661
Target:  5'- cGCCUGCAGGcgacGGGGCGCGaaCGUCCa- -3'
miRNA:   3'- aUGGGCGUUUu---UUUUGCGC--GCAGGgu -5'
24357 5' -50.6 NC_005264.1 + 48790 0.66 0.995662
Target:  5'- gGCCgGCGGGGcGAACGaccuCGCGuuUCCCAc -3'
miRNA:   3'- aUGGgCGUUUUuUUUGC----GCGC--AGGGU- -5'
24357 5' -50.6 NC_005264.1 + 149384 0.66 0.995452
Target:  5'- -cCCCGCAGGAgccccuucggcgccGccGCGuCGCGUCUCGg -3'
miRNA:   3'- auGGGCGUUUU--------------UuuUGC-GCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 135553 0.66 0.994931
Target:  5'- --aCCGCGAugacuuucGAGAAGcCGCGCGUCgCu -3'
miRNA:   3'- augGGCGUU--------UUUUUU-GCGCGCAGgGu -5'
24357 5' -50.6 NC_005264.1 + 115815 0.66 0.994931
Target:  5'- --aCCGCG--GGAGGC-CGCGUUCCAc -3'
miRNA:   3'- augGGCGUuuUUUUUGcGCGCAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 45566 0.67 0.984852
Target:  5'- cGCCCGUGuc---GGCGCGCacgaGUCCCu -3'
miRNA:   3'- aUGGGCGUuuuuuUUGCGCG----CAGGGu -5'
24357 5' -50.6 NC_005264.1 + 157795 0.66 0.995662
Target:  5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3'
miRNA:   3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 6889 0.69 0.963914
Target:  5'- -gUCCGCGAGc----CGCGCaGUCCCAg -3'
miRNA:   3'- auGGGCGUUUuuuuuGCGCG-CAGGGU- -5'
24357 5' -50.6 NC_005264.1 + 69357 0.69 0.963914
Target:  5'- gGCCCGUuugu--GGCGCGUGUCgCGu -3'
miRNA:   3'- aUGGGCGuuuuuuUUGCGCGCAGgGU- -5'
24357 5' -50.6 NC_005264.1 + 111422 0.69 0.960318
Target:  5'- gGCCUGcCGGAAAccAUGCGCGUUCUg -3'
miRNA:   3'- aUGGGC-GUUUUUuuUGCGCGCAGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.