Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24357 | 5' | -50.6 | NC_005264.1 | + | 20334 | 0.74 | 0.780733 |
Target: 5'- cACCgGCAAgcAGGAAACGCGcCGUgCCAg -3' miRNA: 3'- aUGGgCGUU--UUUUUUGCGC-GCAgGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 33850 | 0.66 | 0.993072 |
Target: 5'- cGCgCCGCGGcagagcuGAAGAACGUggaGCGUCCg- -3' miRNA: 3'- aUG-GGCGUU-------UUUUUUGCG---CGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 48790 | 0.66 | 0.995662 |
Target: 5'- gGCCgGCGGGGcGAACGaccuCGCGuuUCCCAc -3' miRNA: 3'- aUGGgCGUUUUuUUUGC----GCGC--AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 157795 | 0.66 | 0.995662 |
Target: 5'- -cCCUGcCAGAAGGGuACGUGCcucGUCCCGg -3' miRNA: 3'- auGGGC-GUUUUUUU-UGCGCG---CAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 161470 | 0.67 | 0.99019 |
Target: 5'- gAUCCGCGAAAAgggggugacguAGACaccgggcucaggucuGCGUGUCCCc -3' miRNA: 3'- aUGGGCGUUUUU-----------UUUG---------------CGCGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 29892 | 0.66 | 0.990955 |
Target: 5'- cUugCCGCGAAG---GCGUGCGgcgcuacCCCGu -3' miRNA: 3'- -AugGGCGUUUUuuuUGCGCGCa------GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 139294 | 0.66 | 0.990955 |
Target: 5'- cAUCCGCGGu---AGCGCguaGCGUUCCGc -3' miRNA: 3'- aUGGGCGUUuuuuUUGCG---CGCAGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 16448 | 0.67 | 0.988207 |
Target: 5'- cUGCCCGCGGGuguGAACGUG-GUCgaaCCAg -3' miRNA: 3'- -AUGGGCGUUUuu-UUUGCGCgCAG---GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 117314 | 0.67 | 0.988054 |
Target: 5'- cGCgUGCGAcuGAGAAGCGUGCGcgggucgUCCCu -3' miRNA: 3'- aUGgGCGUU--UUUUUUGCGCGC-------AGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 121416 | 0.67 | 0.98661 |
Target: 5'- cGCCCGCAGGAGcccGGCGC-CGgccugCCUAg -3' miRNA: 3'- aUGGGCGUUUUUu--UUGCGcGCa----GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 33429 | 0.67 | 0.98661 |
Target: 5'- cGCCCGCGAGAAuAAACcccCGCGcugacuauuaauUCCCGc -3' miRNA: 3'- aUGGGCGUUUUU-UUUGc--GCGC------------AGGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 152727 | 0.66 | 0.990955 |
Target: 5'- gACCCGCGAAGAAAGCGauCGg-CUAu -3' miRNA: 3'- aUGGGCGUUUUUUUUGCgcGCagGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 45566 | 0.67 | 0.984852 |
Target: 5'- cGCCCGUGuc---GGCGCGCacgaGUCCCu -3' miRNA: 3'- aUGGGCGUuuuuuUUGCGCG----CAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 45675 | 0.67 | 0.984852 |
Target: 5'- gGCCCGCuucauguGAGAGuAAgGCGCGaaguugCCCAg -3' miRNA: 3'- aUGGGCGu------UUUUU-UUgCGCGCa-----GGGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 155985 | 0.67 | 0.982923 |
Target: 5'- aGCCCGCAcgacaGAGGuuGCGCGCuggCgCCAu -3' miRNA: 3'- aUGGGCGU-----UUUUuuUGCGCGca-G-GGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 133498 | 0.67 | 0.98272 |
Target: 5'- gUACCCgGCAGAcgucguagccgcaGGAGGCGCuGUGUCCa- -3' miRNA: 3'- -AUGGG-CGUUU-------------UUUUUGCG-CGCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 150724 | 0.68 | 0.976024 |
Target: 5'- cUGCCCGcCAAAGGucGCGCGCGgggCgUAc -3' miRNA: 3'- -AUGGGC-GUUUUUuuUGCGCGCa--GgGU- -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 56079 | 0.68 | 0.976024 |
Target: 5'- cGCCCGCu-----GACGCcGCGUCUUg -3' miRNA: 3'- aUGGGCGuuuuuuUUGCG-CGCAGGGu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 13898 | 0.67 | 0.98661 |
Target: 5'- cGCCUGCAGGcgacGGGGCGCGaaCGUCCa- -3' miRNA: 3'- aUGGGCGUUUu---UUUUGCGC--GCAGGgu -5' |
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24357 | 5' | -50.6 | NC_005264.1 | + | 87438 | 0.66 | 0.992014 |
Target: 5'- cUGCCCGCGgccgcgcAGAcgGugGCGCG-CaCCAc -3' miRNA: 3'- -AUGGGCGU-------UUUuuUugCGCGCaG-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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